Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
- cytosol 1
- peroxisome 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0010g03800.t01 | |
| VIT_15s0046g00260.t01 | |
| VIT_15s0048g00220.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G18150.1 | VIT_01s0010g03800.t01 | AT1G27300.1 | 21798944 |
| AT5G18150.1 | VIT_15s0046g00260.t01 | AT2G46550.1 | 21798944 |
| AT5G18150.1 | VIT_15s0048g00220.t01 | AT3G60600.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G18150.1 | Thale cress | extracellular | 55.68 | 64.47 |
| CDX85592 | Canola | extracellular | 53.41 | 63.51 |
| Bra023477.1-P | Field mustard | extracellular | 53.41 | 63.51 |
| VIT_08s0007g07390.t01 | Wine grape | extracellular | 63.64 | 62.92 |
| CDY38491 | Canola | extracellular | 55.68 | 62.82 |
| Bra023476.1-P | Field mustard | extracellular | 52.27 | 62.16 |
| AT5G14602.1 | Thale cress | extracellular | 55.68 | 61.25 |
| CDY25454 | Canola | extracellular | 56.82 | 60.98 |
| CDY53255 | Canola | extracellular | 54.55 | 60.76 |
| Bra002138.1-P | Field mustard | extracellular | 55.68 | 59.76 |
| Bra006442.1-P | Field mustard | extracellular | 55.68 | 59.76 |
| CDX91042 | Canola | extracellular | 52.27 | 59.74 |
| KRH70160 | Soybean | extracellular | 57.95 | 59.3 |
| CDX78780 | Canola | extracellular | 55.68 | 59.04 |
| CDX70798 | Canola | extracellular | 55.68 | 59.04 |
| KRH08496 | Soybean | extracellular | 57.95 | 58.62 |
| KRG94827 | Soybean | endoplasmic reticulum, extracellular | 48.86 | 53.09 |
| KRH06709 | Soybean | endoplasmic reticulum, extracellular | 52.27 | 52.87 |
| PGSC0003DMT400008688 | Potato | extracellular | 55.68 | 51.58 |
| Solyc06g075190.1.1 | Tomato | extracellular | 54.55 | 50.53 |
| CDX91043 | Canola | extracellular | 52.27 | 50.0 |
| GSMUA_Achr10P... | Banana | extracellular | 43.18 | 46.34 |
| GSMUA_Achr6P11540_001 | Banana | extracellular | 39.77 | 42.68 |
| CDY02643 | Canola | cytosol, golgi, nucleus | 48.86 | 35.25 |
| VIT_06s0004g07850.t01 | Wine grape | golgi | 40.91 | 30.25 |
Protein Annotations
| ArrayExpress:VIT_11s0149g00310 | EMBL:FN595516 | EnsemblPlants:VIT_11s0149g00310.t01 | EnsemblPlantsGene:VIT_11s0149g00310 | EntrezGene:100255594 | EntrezGene:LOC100255594 |
| PANTHER:PTHR34132 | PANTHER:PTHR34132:SF1 | ProteinID:CBI25626 | ProteinID:CBI25626.3 | RefSeq:XP_002270086 | RefSeq:XP_002270086.1 |
| SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI00015CDE39 | UniProt:D7T544 | wikigene:100255594 | wikigene:LOC100255594 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr11:+:7207391..7208068
Molecular Weight (calculated)
10393.6 Da
IEP (calculated)
9.770
GRAVY (calculated)
-0.400
Length
88 amino acids
Sequence
(BLAST)
(BLAST)
1: MCPLRFILVF FSAVLAGYFA WRTVRSSQET GLSLEDSNLE NVPSKDKQEL NFKRMIRDGF WGFVDMASGR YLWRNLREMK NNEKMKSC
1: MCPLRFVLVF FSAVLAGYIA WRTVNSTPEL FSDELLQAEA KEKQGLDFKR KMDNGLWTFV DMASGRYLWR NLKEMRQRSQ
Arabidopsis Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Methyltransferase-related protein (TAIR:AT5G18150.1); Has 30201 Blast hits to 17322 prote /.../ 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G14602]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.