Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX91042 | Canola | extracellular | 69.57 | 83.12 |
| CDX85592 | Canola | extracellular | 61.96 | 77.03 |
| CDY25454 | Canola | extracellular | 53.26 | 59.76 |
| CDY53255 | Canola | extracellular | 51.09 | 59.49 |
| CDX78780 | Canola | extracellular | 53.26 | 59.04 |
| CDY38491 | Canola | extracellular | 50.0 | 58.97 |
| AT5G14602.1 | Thale cress | extracellular | 51.09 | 58.75 |
| CDX70798 | Canola | extracellular | 52.17 | 57.83 |
| VIT_11s0149g00310.t01 | Wine grape | extracellular | 50.0 | 52.27 |
| VIT_08s0007g07390.t01 | Wine grape | extracellular | 48.91 | 50.56 |
| KRH70160 | Soybean | extracellular | 46.74 | 50.0 |
| KRH08496 | Soybean | extracellular | 45.65 | 48.28 |
| KRG94827 | Soybean | endoplasmic reticulum, extracellular | 38.04 | 43.21 |
| KRH06709 | Soybean | endoplasmic reticulum, extracellular | 39.13 | 41.38 |
| PGSC0003DMT400008688 | Potato | extracellular | 42.39 | 41.05 |
| Solyc06g075190.1.1 | Tomato | extracellular | 42.39 | 41.05 |
| GSMUA_Achr10P... | Banana | extracellular | 35.87 | 40.24 |
| CDY02643 | Canola | cytosol, golgi, nucleus | 48.91 | 36.89 |
| GSMUA_Achr6P11540_001 | Banana | extracellular | 32.61 | 36.59 |
| CDX88672 | Canola | extracellular | 31.52 | 34.12 |
| CDY71001 | Canola | extracellular | 31.52 | 32.95 |
| CDY43858 | Canola | extracellular | 30.43 | 32.18 |
| CDY70047 | Canola | extracellular | 30.43 | 32.18 |
Protein Annotations
| EnsemblPlants:CDX91043 | EnsemblPlantsGene:GSBRNA2T00151811001 | PANTHER:PTHR34132 | PANTHER:PTHR34132:SF1 | ProteinID:CDX91043 | ProteinID:CDX91043.1 |
| SEG:seg | SignalP:SignalP-noTM | UniParc:UPI0004EB8278 | MapMan:35.2 | : | : |
Description
BnaC02g05540D
Coordinates
chrLK031865:-:481819..482515
Molecular Weight (calculated)
10613.6 Da
IEP (calculated)
9.068
GRAVY (calculated)
-0.477
Length
92 amino acids
Sequence
(BLAST)
(BLAST)
1: MCPLRFVLVF FSVVLAGYFA WKTVDSSLEL NSEGSPVEAK EKDDKQGLGF KRKMYNGFWM FVDMASGRNK NVRGASQNIR SEGSESRYWH YE
1: MCPLRFVLVF FSAVLAGYIA WRTVNSTPEL FSDELLQAEA KEKQGLDFKR KMDNGLWTFV DMASGRYLWR NLKEMRQRSQ
Arabidopsis Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Methyltransferase-related protein (TAIR:AT5G18150.1); Has 30201 Blast hits to 17322 prote /.../ 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G14602]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.