CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX71796
CDX80028
CDX84933
CDX89063
CDY03907
CDY15722
CDY27317
CDY27605
CDY41153
CDY48365
CDY56879
CDY61731

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18150.1	CDX84933	AT1G27300.1	21798944
AT5G18150.1	CDY03907	AT1G27300.1	21798944
AT5G18150.1	CDY15722	AT1G27300.1	21798944
AT5G18150.1	CDY27605	AT1G27300.1	21798944
AT5G18150.1	CDX80028	AT2G46550.1	21798944
AT5G18150.1	CDY27317	AT2G46550.1	21798944
AT5G18150.1	CDY56879	AT2G46550.1	21798944
AT5G18150.1	CDY61731	AT2G46550.1	21798944
AT5G18150.1	CDX67837	AT3G60600.1	21798944
AT5G18150.1	CDX71796	AT3G60600.1	21798944
AT5G18150.1	CDX89063	AT3G60600.1	21798944
AT5G18150.1	CDY41153	AT3G60600.1	21798944
AT5G18150.1	CDY48365	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25454	Canola	extracellular	94.87	90.24
Bra002138.1-P	Field mustard	extracellular	93.59	89.02
CDX78780	Canola	extracellular	84.62	79.52
AT5G18150.1	Thale cress	extracellular	76.92	78.95
CDX70798	Canola	extracellular	83.33	78.31
CDY53255	Canola	extracellular	75.64	74.68
CDX85592	Canola	extracellular	62.82	66.22
CDX91042	Canola	extracellular	62.82	63.64
VIT_11s0149g00310.t01	Wine grape	extracellular	62.82	55.68
KRH70160	Soybean	extracellular	58.97	53.49
KRH08496	Soybean	extracellular	57.69	51.72
VIT_08s0007g07390.t01	Wine grape	extracellular	58.97	51.69
GSMUA_Achr10P...	Banana	extracellular	53.85	51.22
CDX91043	Canola	extracellular	58.97	50.0
KRG94827	Soybean	endoplasmic reticulum, extracellular	51.28	49.38
PGSC0003DMT400008688	Potato	extracellular	58.97	48.42
GSMUA_Achr6P11540_001	Banana	extracellular	50.0	47.56
CDY02643	Canola	cytosol, golgi, nucleus	74.36	47.54
Solyc06g075190.1.1	Tomato	extracellular	57.69	47.37
KRH06709	Soybean	endoplasmic reticulum, extracellular	52.56	47.13
CDX88672	Canola	extracellular	43.59	40.0
CDY43858	Canola	extracellular	43.59	39.08
CDY70047	Canola	extracellular	43.59	39.08
CDY71001	Canola	extracellular	43.59	38.64

Protein Annotations

EnsemblPlants:CDY38491	EnsemblPlantsGene:GSBRNA2T00065939001	ncoils:Coil	PANTHER:PTHR34132	PANTHER:PTHR34132:SF1	ProteinID:CDY38491
ProteinID:CDY38491.1	SEG:seg	SignalP:SignalP-noTM	UniParc:UPI0004EDD690	UniProt:A0A078HLH9	MapMan:35.2

Description

BnaA10g16670DBnaA10g16670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HLH9]

Coordinates

chrLK032424:-:260246..260895

Molecular Weight (calculated)

9152.0 Da

IEP (calculated)

6.552

GRAVY (calculated)

-0.383

Length

78 amino acids

Sequence
(BLAST)

1: MCPLRFLLVF FSAVLAGYFA WKTVSSSSPE DDDSPDELNE KQGLCFRKRM ENGFWVFVDM ASGKYLWRNL KEMRDKSQ

Best Arabidopsis Sequence Match ( AT5G18150.1 )
(BLAST)

1: MCPMRFLLVF FSAVLAGYFA WKTVSSSPEF DSPDELNEKQ ELNLKKKMEN GFWVFVDMAS GRYLWRNLKE MREKSQ

Arabidopsis Description

Emb [Source:UniProtKB/TrEMBL;Acc:Q9FK55]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.