CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71815
CDX74305
CDX84893
CDX90721
CDX91942
CDY00016
CDY05057
CDY41170
CDY45796
CDY56997
CDY58906
CDY59823

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46550.1	CDY00016	AT1G54770.1	21798944
AT2G46550.1	CDY59823	AT1G54770.1	21798944
AT2G46550.1	CDX74305	AT3G01550.1	21798944
AT2G46550.1	CDX91942	AT3G01550.1	21798944
AT2G46550.1	CDX71815	AT3G60360.1	21798944
AT2G46550.1	CDY41170	AT3G60360.1	21798944
AT2G46550.1	CDY56997	AT3G60360.1	21798944
AT2G46550.1	CDY58906	AT3G60360.1	21798944
AT2G46550.1	CDX90721	AT4G09460.1	21798944
AT2G46550.1	CDY05057	AT4G09460.1	21798944
AT2G46550.1	CDX84893	AT5G51010.1	21798944
AT2G46550.1	CDY45796	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039276.1-P	Field mustard	nucleus	96.17	88.79
Bra039275.1-P	Field mustard	nucleus	45.05	78.77
CDY27317	Canola	nucleus	80.19	77.23
CDX85174	Canola	nucleus	40.58	62.25
CDX99425	Canola	nucleus	11.18	55.56
CDY68438	Canola	nucleus	11.18	55.56
CDX80028	Canola	nucleus, plastid	63.26	50.9
AT2G46550.1	Thale cress	nucleus, plastid	64.22	50.63
CDY56879	Canola	nucleus	61.66	49.49
CDY15190	Canola	mitochondrion	34.5	34.73
CDX90019	Canola	mitochondrion	35.14	32.84
KRH68927	Soybean	nucleus	43.45	31.92
KRG97204	Soybean	nucleus	42.81	31.46
CDY38000	Canola	mitochondrion	33.23	30.59
VIT_15s0046g00260.t01	Wine grape	mitochondrion, nucleus	44.09	28.87
KRH47890	Soybean	cytosol, mitochondrion	39.94	28.15
KRH06447	Soybean	cytosol, mitochondrion	39.62	27.87
KXG35486	Sorghum	cytosol, mitochondrion, nucleus, plasma membrane	35.46	23.67
Zm00001d020233_P001	Maize	mitochondrion	34.82	23.39
TraesCS5B01G190300.1	Wheat	cytosol, mitochondrion	33.87	22.75
HORVU5Hr1G057510.3	Barley	cytosol, mitochondrion	33.55	22.68
Os08t0400300-01	Rice	nucleus	34.82	22.66
TraesCS5D01G198100.1	Wheat	cytosol, mitochondrion	33.87	22.65
Zm00001d032283_P004	Maize	mitochondrion	34.19	22.34
Os09t0363500-01	Rice	mitochondrion	32.91	22.25
TraesCS5A01G194900.2	Wheat	cytosol, mitochondrion	33.87	22.18
Solyc03g083000.2.1	Tomato	nucleus	28.75	22.17
Zm00001d005653_P001	Maize	nucleus	32.91	22.1
EES13800	Sorghum	mitochondrion	33.55	21.92
PGSC0003DMT400047670	Potato	nucleus	27.8	21.38
GSMUA_AchrUn_...	Banana	cytosol	8.63	11.49

Protein Annotations

EnsemblPlants:CDY61731	EnsemblPlantsGene:GSBRNA2T00034277001	GO:A0A078J9I2	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
ncoils:Coil	PANTHER:PTHR33868	PANTHER:PTHR33868:SF2	ProteinID:CDY61731	ProteinID:CDY61731.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0004EE2767	UniProt:A0A078J9I2	MapMan:35.2	:	:

Description

BnaA04g27190DBnaA04g27190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J9I2]

Coordinates

chrLK034032:+:33650..35572

Molecular Weight (calculated)

35439.0 Da

IEP (calculated)

9.572

GRAVY (calculated)

-0.733

Length

313 amino acids

Sequence
(BLAST)

001: MMAGGEARAV WQRTVNRYLV QEDAKRAPKF TSSHSSSSSS STTKQLLDHH PHHLHVKTPL EAEVNISEKK PELGAKETRE SYGSFGKDES SEIPFDPSSP
101: WNPLSSEKAG PWWRTTDKDE LASLVAQRSL DFFVENCDLP TPQKMKRSSY YGSPRSCLDS VSNQTIHEHG PSSFKKRNES YCESDLSKSE LLEALRRSQT
201: RAREAENMAK EACAEKEHLV KLLFKQASEL FGYKQLMQLL QLEVLYLQIK NKKEPPPVDY IPWSSSKGRK EGRKRRNKMS KPSGLFGLAW GMSLVGAGLL
301: LGWTVGWMQI LSF

Best Arabidopsis Sequence Match ( AT2G46550.1 )
(BLAST)

001: MAAAEARAVW QRTVNRCFVQ EDAKRAPKLT YCQSSSSSTA SSTKQVEVSG SSPRVSVEPR TQSSCAGFMP LPRNPNFPDL LPHNTRLWSH PHHQFQVNKK
101: QPLEDEVNNQ GVSEKKSELG AGEKQGKSFN SESFQEFIEL METRESYGST GYDESSEKKL SELSFDPSSP WNLLSSEKAA PWWRTTDKDE LASLVAQRSL
201: DYVENCDLPT PQKMKRSYYG SPRGFDSDGL RDYSVSGQTI KGTSKGSSCK NRPEASSESD LSKSELLEAL RRSQTRAREA ENMAKEAYAE KEHLVKILLK
301: QAAELFGYKQ WLQLLQLEAL YLQIKNKEID NKNNDDPGVS IPCWSNGKAR KEGRKRRSKR GKPNGAKYAV GLALGMSLVG AGLLLGWTVG WMQMLSF

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPY4]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.