Factsheet for Bra039276.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000680.1-P
Bra001003.1-P
Bra007528.1-P
Bra014494.1-P
Bra022748.1-P
Bra036122.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46550.1	Bra036122.1-P	AT1G54770.1	21798944
AT2G46550.1	Bra001003.1-P	AT3G01550.1	21798944
AT2G46550.1	Bra007528.1-P	AT3G60360.1	21798944
AT2G46550.1	Bra014494.1-P	AT3G60360.1	21798944
AT2G46550.1	Bra000680.1-P	AT4G09460.1	21798944
AT2G46550.1	Bra022748.1-P	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY61731	Canola	nucleus	88.79	96.17
Bra039275.1-P	Field mustard	nucleus	50.44	95.53
AT2G46550.1	Thale cress	nucleus, plastid	60.18	51.39
Bra004527.1-P	Field mustard	nucleus, plastid	58.7	51.16
KRH68927	Soybean	nucleus	41.0	32.63
Bra032629.1-P	Field mustard	mitochondrion	32.45	32.54
KRG97204	Soybean	nucleus	40.71	32.39
Bra033275.1-P	Field mustard	mitochondrion	28.02	31.15
VIT_15s0046g00260.t01	Wine grape	mitochondrion, nucleus	42.77	30.33
KRH47890	Soybean	cytosol, mitochondrion	37.76	28.83
KRH06447	Soybean	cytosol, mitochondrion	37.46	28.54
KXG35486	Sorghum	cytosol, mitochondrion, nucleus, plasma membrane	35.1	25.37
Zm00001d020233_P001	Maize	mitochondrion	34.22	24.89
TraesCS5B01G190300.1	Wheat	cytosol, mitochondrion	33.04	24.03
HORVU5Hr1G057510.3	Barley	cytosol, mitochondrion	32.74	23.97
TraesCS5D01G198100.1	Wheat	cytosol, mitochondrion	33.04	23.93
Os08t0400300-01	Rice	nucleus	33.92	23.91
Os09t0363500-01	Rice	mitochondrion	32.15	23.54
TraesCS5A01G194900.2	Wheat	cytosol, mitochondrion	33.04	23.43
Zm00001d005653_P001	Maize	nucleus	31.86	23.18
Zm00001d032283_P004	Maize	mitochondrion	32.74	23.17
Solyc03g083000.2.1	Tomato	nucleus	27.43	22.91
EES13800	Sorghum	mitochondrion	31.86	22.55
PGSC0003DMT400047670	Potato	nucleus	26.55	22.11
GSMUA_AchrUn_...	Banana	cytosol	8.26	11.91

Protein Annotations

EnsemblPlants:Bra039276.1	EnsemblPlants:Bra039276.1-P	EnsemblPlantsGene:Bra039276	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
ncoils:Coil	PANTHER:PTHR33868	PANTHER:PTHR33868:SF2	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002544636
UniProt:M4FDV5	MapMan:35.2	:	:	:	:

Description

AT2G46550 (E=5e-068) | unknown protein

Coordinates

chrA04:-:18780348..18781367

Molecular Weight (calculated)

38288.2 Da

IEP (calculated)

8.883

GRAVY (calculated)

-0.719

Length

339 amino acids

Sequence
(BLAST)

001: MAGGEARAVW QRTVNRYLVQ EDAKRAPKFT SSHSSSSSSS TTKQVQEDSV SSPPVVHSHN QSAFMPLDYP QLLDHHPHHL HVKTPLEAEV NISEKKPELG
101: AKETRESYGS FGKDESSEIP FDPSSPWNPL SSEKAGPWWR TTDKDELASL VAQRSLDFFV ENCDLPSPQK MKRSYCYGSP RSCLDSVSNQ TIHEHGPSSF
201: KKRNESYCES DLSKSELLEA LRRSQTRARE AENMAKEACA EKEHLVKLLF KQASELFGYK QLMQLLQLEV LYLQIKNKKE PPPVDYIPWS SSKGRKEGRK
301: RRNKMSKPSG LFGLAWGMSL VGAGLLLGWT VGWMQILSF

Best Arabidopsis Sequence Match ( AT2G46550.1 )
(BLAST)

001: MAAAEARAVW QRTVNRCFVQ EDAKRAPKLT YCQSSSSSTA SSTKQVEVSG SSPRVSVEPR TQSSCAGFMP LPRNPNFPDL LPHNTRLWSH PHHQFQVNKK
101: QPLEDEVNNQ GVSEKKSELG AGEKQGKSFN SESFQEFIEL METRESYGST GYDESSEKKL SELSFDPSSP WNLLSSEKAA PWWRTTDKDE LASLVAQRSL
201: DYVENCDLPT PQKMKRSYYG SPRGFDSDGL RDYSVSGQTI KGTSKGSSCK NRPEASSESD LSKSELLEAL RRSQTRAREA ENMAKEAYAE KEHLVKILLK
301: QAAELFGYKQ WLQLLQLEAL YLQIKNKEID NKNNDDPGVS IPCWSNGKAR KEGRKRRSKR GKPNGAKYAV GLALGMSLVG AGLLLGWTVG WMQMLSF

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPY4]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.