CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plasma membrane, mitochondrion

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01839
EES03779
EES05586
EES09846
EES16743
EES17796
KXG22070
KXG31751
OQU78830
OQU83016

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46550.1	EES05586	AT1G54770.1	21798944
AT2G46550.1	EES17796	AT3G01550.1	21798944
AT2G46550.1	KXG31751	AT3G01550.1	21798944
AT2G46550.1	EES03779	AT3G60360.1	21798944
AT2G46550.1	EES01839	AT4G09460.1	21798944
AT2G46550.1	EES16743	AT4G09460.1	21798944
AT2G46550.1	KXG22070	AT4G09460.1	21798944
AT2G46550.1	OQU78830	AT4G09460.1	21798944
AT2G46550.1	OQU83016	AT4G09460.1	21798944
AT2G46550.1	EES09846	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020233_P001	Maize	mitochondrion	84.44	84.98
Zm00001d005653_P001	Maize	nucleus	74.63	75.11
Os09t0363500-01	Rice	mitochondrion	64.61	65.44
HORVU5Hr1G057510.3	Barley	cytosol, mitochondrion	61.62	62.42
TraesCS5D01G198100.1	Wheat	cytosol, mitochondrion	61.41	61.54
TraesCS5B01G190300.1	Wheat	cytosol, mitochondrion	60.34	60.73
TraesCS5A01G194900.2	Wheat	cytosol, mitochondrion	60.98	59.83
GSMUA_Achr7P24360_001	Banana	nucleus	19.19	54.88
EES13800	Sorghum	mitochondrion	52.24	51.15
GSMUA_Achr3P32190_001	Banana	mitochondrion, nucleus	33.9	40.05
AT1G01240.3	Thale cress	mitochondrion	25.8	36.56
CDX99425	Canola	nucleus	4.9	36.51
CDY68438	Canola	nucleus	4.9	36.51
GSMUA_Achr4P09100_001	Banana	cytosol	36.67	35.91
CDY61731	Canola	nucleus	23.67	35.46
Bra039276.1-P	Field mustard	nucleus	25.37	35.1
CDY27317	Canola	nucleus	23.88	34.46
CDY15190	Canola	mitochondrion	22.81	34.41
CDX85174	Canola	nucleus	14.71	33.82
CDX90019	Canola	mitochondrion	23.88	33.43
Bra032629.1-P	Field mustard	mitochondrion	24.09	33.43
AT2G46550.1	Thale cress	nucleus, plastid	28.14	33.25
CDY38000	Canola	mitochondrion	24.09	33.24
PGSC0003DMT400000655	Potato	mitochondrion	32.62	32.55
Solyc01g096100.2.1	Tomato	nucleus	32.62	32.28
CDX80028	Canola	nucleus, plastid	25.59	30.85
Bra004527.1-P	Field mustard	nucleus, plastid	25.59	30.85
Bra039275.1-P	Field mustard	nucleus	11.73	30.73
CDY56879	Canola	nucleus	25.37	30.51
KRH53526	Soybean	nucleus	29.64	30.15
Bra033275.1-P	Field mustard	mitochondrion	19.4	29.84
KRH64409	Soybean	nucleus	28.78	29.22
VIT_16s0098g01690.t01	Wine grape	nucleus, plastid	31.56	29.13
Solyc03g083000.2.1	Tomato	nucleus	22.17	25.62
PGSC0003DMT400047670	Potato	nucleus	22.17	25.55

Protein Annotations

EnsemblPlants:KXG35486	EnsemblPlantsGene:SORBI_3002G181300	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR33868
PANTHER:PTHR33868:SF1	ProteinID:KXG35486	ProteinID:KXG35486.1	ProteinID:OQU89373.1	ProteinID:OQU89374.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI00081AC745	UniProt:A0A1B6QC40	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr2:+:56247717..56251077

Molecular Weight (calculated)

52209.8 Da

IEP (calculated)

7.139

GRAVY (calculated)

-0.625

Length

469 amino acids

Sequence
(BLAST)

001: MAAAEARAAW QRAANRCLVQ EDAKRAPKLA CCPPPLQPHD ASDGSPPSPQ DLHSPTFMPI NWNLMNSSLP METQWWLQLQ PNFGCQAALA RDHLNYVGGD
101: AAEKKMEGLA APVSKLEDVQ AKNAADPFEP PWIVSMASMK QTPETGLEEL KNLAFYTPVS LKCKGNANNC IYEDKESAEF KAFDPLFPKK PQKEHCEMHA
201: PWEQTKKSQP WWQVADVDGL ASLVAERAME NIINNDLPRP TQTVRVHGAE VKGRENKDDY GLPALSVGKE PDPVHDTMEY SYSVSSTTND TYSSDGGRWQ
301: QHQRNNVPGD AQDSDGSTIN TPGSKPTYQN ASERAKLLDA LRHSQTRARE AEIAAKKAYD EKDHVIKLLF RQASHLFACK QWLKMLQLEN ICLQLRFKEH
401: QIATMFPDLP WMVVKEKVAP SQEHNDGTRK KGRRPNRKGG LCNAVAFAVG VGLVGAGLLL GWTLGWLLP

Best Arabidopsis Sequence Match ( AT2G46550.1 )
(BLAST)

001: MAAAEARAVW QRTVNRCFVQ EDAKRAPKLT YCQSSSSSTA SSTKQVEVSG SSPRVSVEPR TQSSCAGFMP LPRNPNFPDL LPHNTRLWSH PHHQFQVNKK
101: QPLEDEVNNQ GVSEKKSELG AGEKQGKSFN SESFQEFIEL METRESYGST GYDESSEKKL SELSFDPSSP WNLLSSEKAA PWWRTTDKDE LASLVAQRSL
201: DYVENCDLPT PQKMKRSYYG SPRGFDSDGL RDYSVSGQTI KGTSKGSSCK NRPEASSESD LSKSELLEAL RRSQTRAREA ENMAKEAYAE KEHLVKILLK
301: QAAELFGYKQ WLQLLQLEAL YLQIKNKEID NKNNDDPGVS IPCWSNGKAR KEGRKRRSKR GKPNGAKYAV GLALGMSLVG AGLLLGWTVG WMQMLSF

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPY4]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.