CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032629.1-P	Field mustard	mitochondrion	90.29	90.83
AT1G01240.3	Thale cress	mitochondrion	67.35	69.18
CDY15190	Canola	mitochondrion	57.94	63.34
CDX90019	Canola	mitochondrion	59.71	60.6
CDX99425	Canola	nucleus	8.53	46.03
CDY68438	Canola	nucleus	8.53	46.03
CDY27317	Canola	nucleus	33.24	34.77
CDX85174	Canola	nucleus	20.0	33.33
CDY61731	Canola	nucleus	30.59	33.23
KRH68927	Soybean	nucleus	38.24	30.52
KRG97204	Soybean	nucleus	37.94	30.28
CDY56879	Canola	nucleus	32.65	28.46
CDX80028	Canola	nucleus, plastid	32.35	28.28
KRH47890	Soybean	cytosol, mitochondrion	36.18	27.7
VIT_15s0046g00260.t01	Wine grape	mitochondrion, nucleus	37.94	26.99
KRH06447	Soybean	cytosol, mitochondrion	35.29	26.97
Zm00001d005653_P001	Maize	nucleus	33.53	24.46
Zm00001d020233_P001	Maize	mitochondrion	33.53	24.46
KXG35486	Sorghum	cytosol, mitochondrion, nucleus, plasma membrane	33.24	24.09
HORVU5Hr1G057510.3	Barley	cytosol, mitochondrion	32.65	23.97
Os08t0400300-01	Rice	nucleus	33.82	23.91
TraesCS5B01G190300.1	Wheat	cytosol, mitochondrion	32.35	23.61
TraesCS5D01G198100.1	Wheat	cytosol, mitochondrion	32.35	23.5
TraesCS5A01G194900.2	Wheat	cytosol, mitochondrion	32.65	23.22
Zm00001d032283_P004	Maize	mitochondrion	32.35	22.96
Os09t0363500-01	Rice	mitochondrion	30.59	22.46
EES13800	Sorghum	mitochondrion	31.18	22.13
Solyc03g083000.2.1	Tomato	nucleus	26.18	21.92
PGSC0003DMT400047670	Potato	nucleus	25.59	21.38
GSMUA_AchrUn_...	Banana	cytosol	7.94	11.49

Protein Annotations

EnsemblPlants:CDY38000	EnsemblPlantsGene:GSBRNA2T00065054001	GO:A0A078HHW6	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
ncoils:Coil	PANTHER:PTHR33868	PANTHER:PTHR33868:SF2	ProteinID:CDY38000	ProteinID:CDY38000.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0004EEFD66	UniProt:A0A078HHW6	MapMan:35.2	:	:

Description

BnaCnng08610DBnaCnng08610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HHW6]

Coordinates

chrLK032414:+:40808..42654

Molecular Weight (calculated)

38572.4 Da

IEP (calculated)

7.043

GRAVY (calculated)

-0.701

Length

340 amino acids

Sequence
(BLAST)

001: MGAAEVRALW QRRASRCFLV HEDATMPPRL ACCCHQQQQQ HSSSSSSGKN SFSSTSFGDS SDFSSDTKWW LKGGSAGFDE EIANSFLQDT KLQQFVDLTK
101: ISKEEEEEEE DYSFISKKDT ATMPWWRSAT DQDELALLVS TRSVDHHIQN CDLPPPQKLH KSIHCTTNGE KGFQTAVIKS PWKQGAWSDR FESSSNSTDS
201: KNTSPKSSPQ SDDLISKAQL LEALRHSQTR AREAEEAAKE ACAEKDRLVT VLMRQARQIL AYKQWIKLLE MESLYLHMKE EEEEQGHVEG MNLKKRMQRG
301: KKKNKKMGEI GRYMMAFALG FSLIGAGLLL GWTVGWLFPF

Best Arabidopsis Sequence Match ( AT1G01240.2 )
(BLAST)

001: MGAAEARALW QRTASRCFVV HEDAKMAPRL ACCQHQQSSS GNTEKNSFSS GSFGDSSDFS CDTKWWLKGS TGFDEEVTNS FLEDTKCKKL HEFVDLIGIR
101: EEEDYSFISK KADATTPWWR STTDKDELAL MVATKSVDHN IQNCDLPPPQ KLHKSIHSSS GEKGFKTAVK SPWKQGVWKD RFERSLSYNG STESKNTSPM
201: SSPRSDDLSK GQLLEALRHS QTRAREAERA AREACAEKDR VITILLKQAS QMLAYKQWLK LLEMEALYLQ MKKEEEQEEQ VKGMNLKKRK QRGEKKKKGE
301: TGRYMMAFAL GFSLIGAGLL LGWTVGWLLP F

Arabidopsis Description

At1g01240/F6F3_11 [Source:UniProtKB/TrEMBL;Acc:Q9LNJ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.