CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15190	Canola	mitochondrion	75.52	81.35
AT1G01240.3	Thale cress	mitochondrion	70.75	71.6
Bra033275.1-P	Field mustard	mitochondrion	55.82	61.31
CDY38000	Canola	mitochondrion	60.6	59.71
CDX99425	Canola	nucleus	8.96	47.62
CDY68438	Canola	nucleus	8.96	47.62
CDX85174	Canola	nucleus	22.69	37.25
CDY27317	Canola	nucleus	35.52	36.62
CDY61731	Canola	nucleus	32.84	35.14
CDX80028	Canola	nucleus, plastid	35.22	30.33
CDY56879	Canola	nucleus	34.63	29.74
KRH68927	Soybean	nucleus	36.72	28.87
VIT_15s0046g00260.t01	Wine grape	mitochondrion, nucleus	41.19	28.87
KRG97204	Soybean	nucleus	35.82	28.17
KRH47890	Soybean	cytosol, mitochondrion	35.82	27.03
KRH06447	Soybean	cytosol, mitochondrion	34.93	26.29
Zm00001d020233_P001	Maize	mitochondrion	33.73	24.25
KXG35486	Sorghum	cytosol, mitochondrion, nucleus, plasma membrane	33.43	23.88
Os08t0400300-01	Rice	nucleus	33.73	23.49
Zm00001d005653_P001	Maize	nucleus	32.24	23.18
Zm00001d032283_P004	Maize	mitochondrion	33.13	23.17
HORVU5Hr1G057510.3	Barley	cytosol, mitochondrion	31.94	23.11
TraesCS5B01G190300.1	Wheat	cytosol, mitochondrion	31.64	22.75
TraesCS5D01G198100.1	Wheat	cytosol, mitochondrion	31.64	22.65
PGSC0003DMT400047670	Potato	nucleus	27.46	22.6
EES13800	Sorghum	mitochondrion	32.24	22.55
Solyc03g083000.2.1	Tomato	nucleus	27.16	22.41
TraesCS5A01G194900.2	Wheat	cytosol, mitochondrion	31.94	22.38
Os09t0363500-01	Rice	mitochondrion	30.45	22.03
GSMUA_AchrUn_...	Banana	cytosol	8.36	11.91

Protein Annotations

EnsemblPlants:CDX90019	EnsemblPlantsGene:GSBRNA2T00150518001	GO:A0A078DNF3	ncoils:Coil	PANTHER:PTHR33868	ProteinID:CDX90019
ProteinID:CDX90019.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EED801	MapMan:35.2	:

Description

BnaA10g00630D

Coordinates

chrLK031861:+:1287210..1288217

Molecular Weight (calculated)

37976.2 Da

IEP (calculated)

9.233

GRAVY (calculated)

-0.606

Length

335 amino acids

Sequence
(BLAST)

001: MGAAEARALW QRTAAGRCFV VHEDSKMAPR LASCHHHQRS SSGNTEKDSF SSGSFGDFSC DTKWWLKGSS GFDEEISNTF FEDDTKCKKL HEFVDLIGIR
101: EQEEVDYSFM SKKDIAATAW WRSSTDKDEL ALLVASRSLD YNIQNCDLPP PQKLHKRIHC TSGEKGFKTL VKSPCKQVAW GDPFERSLSR SGSTESKNTS
201: PKSSLMSDDL SKAQILEALR HSQTRAREAE KAAKEACAEK EGVMSIFLRQ ASQLLAYKQW VNLLEMEANY RQMKEGKEEE PGQIKGVNLK KRKQRRKKIK
301: MVEIGRRYMM AFALGFSLIG AGLFLGWTVG WLFPF

Best Arabidopsis Sequence Match ( AT1G01240.2 )
(BLAST)

001: MGAAEARALW QRTASRCFVV HEDAKMAPRL ACCQHQQSSS GNTEKNSFSS GSFGDSSDFS CDTKWWLKGS TGFDEEVTNS FLEDTKCKKL HEFVDLIGIR
101: EEEDYSFISK KADATTPWWR STTDKDELAL MVATKSVDHN IQNCDLPPPQ KLHKSIHSSS GEKGFKTAVK SPWKQGVWKD RFERSLSYNG STESKNTSPM
201: SSPRSDDLSK GQLLEALRHS QTRAREAERA AREACAEKDR VITILLKQAS QMLAYKQWLK LLEMEALYLQ MKKEEEQEEQ VKGMNLKKRK QRGEKKKKGE
301: TGRYMMAFAL GFSLIGAGLL LGWTVGWLLP F

Arabidopsis Description

At1g01240/F6F3_11 [Source:UniProtKB/TrEMBL;Acc:Q9LNJ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.