Factsheet for PGSC0003DMT400047670

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001273
PGSC0003DMT400021078
PGSC0003DMT400036930
PGSC0003DMT400069825
PGSC0003DMT400080427

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46550.1	PGSC0003DMT400069825	AT1G54770.1	21798944
AT2G46550.1	PGSC0003DMT400001273	AT3G01550.1	21798944
AT2G46550.1	PGSC0003DMT400021078	AT3G60360.1	21798944
AT2G46550.1	PGSC0003DMT400080427	AT4G09460.1	21798944
AT2G46550.1	PGSC0003DMT400036930	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g083000.2.1	Tomato	nucleus	92.14	92.36
CDY68438	Canola	nucleus	7.13	46.03
CDX99425	Canola	nucleus	7.13	46.03
AT1G01240.3	Thale cress	mitochondrion	23.83	29.31
CDY15190	Canola	mitochondrion	22.36	29.26
CDY61731	Canola	nucleus	21.38	27.8
CDX90019	Canola	mitochondrion	22.6	27.46
CDY27317	Canola	nucleus	21.62	27.08
Bra039276.1-P	Field mustard	nucleus	22.11	26.55
Bra032629.1-P	Field mustard	mitochondrion	21.87	26.33
CDY38000	Canola	mitochondrion	21.38	25.59
Bra033275.1-P	Field mustard	mitochondrion	17.94	23.93
AT2G46550.1	Thale cress	nucleus, plastid	22.85	23.43
HORVU5Hr1G057510.3	Barley	cytosol, mitochondrion	26.29	23.11
CDY56879	Canola	nucleus	22.11	23.08
CDX80028	Canola	nucleus, plastid	21.62	22.62
Bra004527.1-P	Field mustard	nucleus, plastid	21.62	22.62
TraesCS5D01G198100.1	Wheat	cytosol, mitochondrion	25.8	22.44
TraesCS5A01G194900.2	Wheat	cytosol, mitochondrion	26.04	22.18
KXG35486	Sorghum	cytosol, mitochondrion, nucleus, plasma membrane	25.55	22.17
TraesCS5B01G190300.1	Wheat	cytosol, mitochondrion	25.31	22.1
Zm00001d020233_P001	Maize	mitochondrion	25.06	21.89
PGSC0003DMT400000655	Potato	mitochondrion	25.06	21.7
CDX85174	Canola	nucleus	10.81	21.57
Zm00001d005653_P001	Maize	nucleus	24.57	21.46
Os09t0363500-01	Rice	mitochondrion	24.08	21.17
Zm00001d032283_P004	Maize	mitochondrion	24.32	20.67
Os08t0400300-01	Rice	nucleus	24.08	20.37
EES13800	Sorghum	mitochondrion	23.34	19.83
Bra039275.1-P	Field mustard	nucleus	6.88	15.64

Protein Annotations

EnsemblPlants:PGSC0003DMT400047670	EnsemblPlantsGene:PGSC0003DMG400018529	EntrezGene:102597098	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR33868	PANTHER:PTHR33868:SF8	PGSC:PGSC0003DMG400018529	RefSeq:XP_006350526.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0002963DE9	UniProt:M1BL83	MapMan:35.2	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400018529]

Coordinates

chr3:+:48160321..48164208

Molecular Weight (calculated)

45611.9 Da

IEP (calculated)

7.704

GRAVY (calculated)

-0.571

Length

407 amino acids

Sequence
(BLAST)

001: MSSAQLRFDH NSRNAKRGSQ DFLGGKDFEL HECEKDNSHE PSSMLESELK VLSAESVHVL KLCGGNQLIE DFYSQTYCDD VAKLDHHLKG YNPSAYNYKD
101: SQLHMLQNVV GDGSQRTPIY TDSGGFMELD YYMDLDPGQT KKACSELDSE WIGVQKAQPW WRTADKELSA SGSPNSSGCI TYSDHSWRQS LGIESYNCSN
201: QVSMVEKESL VTPDYCPRQH PSQSQQKILC VGKGCLTRRS GQPVSGGDDN LSIANVLSSE TQPGSSDLSK TQLLEALCHS QTRAREAEQL AQQAYNEKEH
301: VIKLFFRQAS HLFAYRQWLQ ILQLEALVLQ LRNKDEQDSI NYSTCFPVIP IKGRKLKKFR YNKPIKKKTG KGKFKINKSA IAFTLGLSLA GAGLLLGLTM
401: GWLFPAL

Best Arabidopsis Sequence Match ( AT2G46550.2 )
(BLAST)

001: METRESYGST GYDESSEKKL SELSFDPSSP WNLLSSEKAA PWWRTTDKDE LASLVAQRSL DYVENCDLPT PQKMKRSYYG SPRGFDSDGL RDYSVSGQTI
101: KGTSKGSSCK NRPEASSESD LSKSELLEAL RRSQTRAREA ENMAKEAYAE KEHLVKILLK QAAELFGYKQ WLQLLQLEAL YLQIKNKEID NKNNDDPGVS
201: IPCWSNGKAR KEGRKRRSKR GKPNGAKYAV GLALGMSLVG AGLLLGWTVG WMQMLSF

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPY4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.