CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71815
CDX74305
CDX84893
CDX90721
CDX91942
CDY00016
CDY05057
CDY41170
CDY45796
CDY56997
CDY58906
CDY59823

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46550.1	CDY00016	AT1G54770.1	21798944
AT2G46550.1	CDY59823	AT1G54770.1	21798944
AT2G46550.1	CDX74305	AT3G01550.1	21798944
AT2G46550.1	CDX91942	AT3G01550.1	21798944
AT2G46550.1	CDX71815	AT3G60360.1	21798944
AT2G46550.1	CDY41170	AT3G60360.1	21798944
AT2G46550.1	CDY56997	AT3G60360.1	21798944
AT2G46550.1	CDY58906	AT3G60360.1	21798944
AT2G46550.1	CDX90721	AT4G09460.1	21798944
AT2G46550.1	CDY05057	AT4G09460.1	21798944
AT2G46550.1	CDX84893	AT5G51010.1	21798944
AT2G46550.1	CDY45796	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY61731	Canola	nucleus	77.23	80.19
CDX85174	Canola	nucleus	40.0	63.73
CDX99425	Canola	nucleus	11.08	57.14
CDY68438	Canola	nucleus	11.08	57.14
CDX80028	Canola	nucleus, plastid	63.38	52.96
AT2G46550.1	Thale cress	nucleus, plastid	63.38	51.89
CDY56879	Canola	nucleus	60.62	50.51
CDY15190	Canola	mitochondrion	35.38	36.98
CDX90019	Canola	mitochondrion	36.62	35.52
CDY38000	Canola	mitochondrion	34.77	33.24
KRG97204	Soybean	nucleus	40.62	30.99
KRH68927	Soybean	nucleus	40.31	30.75
VIT_15s0046g00260.t01	Wine grape	mitochondrion, nucleus	41.54	28.24
KRH47890	Soybean	cytosol, mitochondrion	37.23	27.25
KRH06447	Soybean	cytosol, mitochondrion	36.31	26.52
KXG35486	Sorghum	cytosol, mitochondrion, nucleus, plasma membrane	34.46	23.88
Zm00001d020233_P001	Maize	mitochondrion	34.15	23.82
Os08t0400300-01	Rice	nucleus	35.08	23.7
Solyc03g083000.2.1	Tomato	nucleus	29.23	23.4
TraesCS5B01G190300.1	Wheat	cytosol, mitochondrion	32.92	22.96
HORVU5Hr1G057510.3	Barley	cytosol, mitochondrion	32.62	22.89
Os09t0363500-01	Rice	mitochondrion	32.62	22.89
TraesCS5D01G198100.1	Wheat	cytosol, mitochondrion	32.92	22.86
Zm00001d032283_P004	Maize	mitochondrion	33.54	22.76
Zm00001d005653_P001	Maize	nucleus	32.62	22.75
TraesCS5A01G194900.2	Wheat	cytosol, mitochondrion	32.62	22.18
EES13800	Sorghum	mitochondrion	32.62	22.13
PGSC0003DMT400047670	Potato	nucleus	27.08	21.62
GSMUA_AchrUn_...	Banana	cytosol	8.0	11.06

Protein Annotations

EnsemblPlants:CDY27317	EnsemblPlantsGene:GSBRNA2T00037253001	GO:A0A078GQ35	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
ncoils:Coil	PANTHER:PTHR33868	PANTHER:PTHR33868:SF2	ProteinID:CDY27317	ProteinID:CDY27317.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0004EE2D0D	UniProt:A0A078GQ35	MapMan:35.2	:	:

Description

BnaC04g50880DBnaC04g50880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQ35]

Coordinates

chrLK032203:+:55798..57318

Molecular Weight (calculated)

36620.5 Da

IEP (calculated)

9.487

GRAVY (calculated)

-0.761

Length

325 amino acids

Sequence
(BLAST)

001: MMAAGEARAV WQRTVNRYLV QEDAKRAPKF TSSHSSSSTK QVQEDSVSSP PVVHPQNQSP FMPLNIPQLL DHHPHHLHVK TPLEAEVNLS EKKPELGAKE
101: TKESYDSFGK DESSEIPFDP TSPWNPLSSE KAGPWWRTTD KDELASLVAQ RSLDFVENCN LPTPQKMKRS SYYGSSPHEQ GPSSCKNRRE EASSSSECDL
201: SKSELLEALR RSQTRAREAE NMAKEACAEK EDLVKLLFKQ ASELFGYRQL MQLLQLEALY LQIKNKKIEK PPRDSIPWKG RKEGRKRRSK RGKASGLFGL
301: ALGMSLVGAG LLLGWTVGWM QILSF

Best Arabidopsis Sequence Match ( AT2G46550.1 )
(BLAST)

001: MAAAEARAVW QRTVNRCFVQ EDAKRAPKLT YCQSSSSSTA SSTKQVEVSG SSPRVSVEPR TQSSCAGFMP LPRNPNFPDL LPHNTRLWSH PHHQFQVNKK
101: QPLEDEVNNQ GVSEKKSELG AGEKQGKSFN SESFQEFIEL METRESYGST GYDESSEKKL SELSFDPSSP WNLLSSEKAA PWWRTTDKDE LASLVAQRSL
201: DYVENCDLPT PQKMKRSYYG SPRGFDSDGL RDYSVSGQTI KGTSKGSSCK NRPEASSESD LSKSELLEAL RRSQTRAREA ENMAKEAYAE KEHLVKILLK
301: QAAELFGYKQ WLQLLQLEAL YLQIKNKEID NKNNDDPGVS IPCWSNGKAR KEGRKRRSKR GKPNGAKYAV GLALGMSLVG AGLLLGWTVG WMQMLSF

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPY4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.