Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000680.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY05057 | Canola | nucleus | 95.98 | 94.71 |
| AT4G09460.1 | Thale cress | nucleus | 83.93 | 79.66 |
| GSMUA_AchrUn_... | Banana | nucleus | 50.45 | 75.84 |
| AT1G35515.1 | Thale cress | nucleus | 65.18 | 68.87 |
| GSMUA_Achr2P20600_001 | Banana | nucleus | 52.68 | 67.43 |
| GSMUA_Achr6P07260_001 | Banana | mitochondrion | 52.68 | 59.3 |
| GSMUA_Achr10P... | Banana | nucleus | 54.46 | 56.22 |
| GSMUA_Achr8P32480_001 | Banana | nucleus | 49.55 | 55.5 |
| GSMUA_Achr3P22200_001 | Banana | nucleus | 53.12 | 54.84 |
| CDX91687 | Canola | nucleus | 54.91 | 54.67 |
| EES16743 | Sorghum | nucleus | 51.79 | 53.95 |
| GSMUA_Achr5P26000_001 | Banana | nucleus | 49.55 | 52.86 |
| Zm00001d041853_P001 | Maize | nucleus | 51.79 | 51.33 |
| GSMUA_Achr6P25420_001 | Banana | nucleus | 53.12 | 50.21 |
| TraesCS1A01G268800.1 | Wheat | nucleus | 54.46 | 49.39 |
| GSMUA_Achr5P17010_001 | Banana | nucleus | 53.12 | 49.38 |
| TraesCS1D01G268900.1 | Wheat | nucleus | 54.02 | 48.99 |
| HORVU1Hr1G074260.1 | Barley | nucleus | 54.46 | 48.61 |
| TraesCS1B01G279400.1 | Wheat | nucleus | 53.57 | 48.58 |
| TraesCS5A01G111300.1 | Wheat | nucleus | 52.68 | 48.36 |
| Zm00001d012255_P001 | Maize | nucleus | 54.02 | 48.21 |
| Os05t0429900-01 | Rice | nucleus | 55.8 | 48.08 |
| CDY21378 | Canola | nucleus | 57.14 | 47.58 |
| Zm00001d042665_P001 | Maize | nucleus | 55.36 | 47.33 |
| CDY04798 | Canola | nucleus | 56.7 | 47.21 |
| CDY25747 | Canola | nucleus | 55.36 | 46.97 |
| Zm00001d010201_P001 | Maize | nucleus | 51.79 | 46.59 |
| Zm00001d038338_P001 | Maize | nucleus | 52.68 | 45.74 |
| EES01839 | Sorghum | nucleus | 54.91 | 45.72 |
| CDY12520 | Canola | nucleus | 55.36 | 45.59 |
| KXG22070 | Sorghum | nucleus | 53.12 | 45.42 |
| HORVU5Hr1G036900.1 | Barley | nucleus | 53.12 | 45.08 |
| TraesCS3A01G384400.1 | Wheat | nucleus | 53.57 | 44.94 |
| GSMUA_Achr9P08600_001 | Banana | nucleus | 54.46 | 44.85 |
| TraesCS3B01G416400.1 | Wheat | nucleus | 52.68 | 44.19 |
| HORVU3Hr1G082210.1 | Barley | nucleus | 53.12 | 44.07 |
| CDY40652 | Canola | nucleus | 53.12 | 43.91 |
| TraesCS3D01G377300.1 | Wheat | nucleus | 53.12 | 43.91 |
| CDX72510 | Canola | nucleus | 53.12 | 43.91 |
| Solyc06g065100.2.1 | Tomato | nucleus | 54.46 | 43.73 |
| Zm00001d004744_P001 | Maize | nucleus | 53.57 | 43.64 |
| GSMUA_Achr5P01180_001 | Banana | nucleus | 50.45 | 43.46 |
| TraesCS5B01G119300.1 | Wheat | nucleus | 52.68 | 43.38 |
| Os01t0874300-01 | Rice | extracellular, nucleus | 54.91 | 42.86 |
| PGSC0003DMT400080427 | Potato | nucleus | 54.46 | 42.81 |
| CDX90285 | Canola | nucleus | 53.57 | 42.4 |
| GSMUA_Achr10P... | Banana | nucleus | 53.57 | 42.25 |
| GSMUA_Achr6P12930_001 | Banana | nucleus | 53.57 | 41.96 |
| CDY22416 | Canola | nucleus | 54.91 | 41.84 |
| CDX72743 | Canola | nucleus | 54.91 | 41.84 |
| TraesCS4A01G217800.1 | Wheat | nucleus | 53.57 | 41.67 |
| TraesCS4D01G092900.1 | Wheat | nucleus | 53.57 | 41.52 |
| CDX75478 | Canola | nucleus | 53.12 | 41.46 |
| CDX69102 | Canola | nucleus | 52.68 | 41.26 |
| OQU78830 | Sorghum | nucleus | 51.34 | 40.78 |
| CDY52797 | Canola | nucleus | 46.88 | 40.7 |
| CDY72116 | Canola | nucleus | 51.79 | 40.42 |
| CDY02243 | Canola | nucleus | 51.79 | 40.42 |
| Zm00001d053060_P001 | Maize | nucleus | 51.79 | 40.28 |
| Os11t0180900-00 | Rice | nucleus | 52.68 | 40.0 |
| CDY12092 | Canola | nucleus | 53.57 | 39.47 |
| TraesCS5D01G128200.2 | Wheat | nucleus | 52.68 | 38.56 |
| OQU83016 | Sorghum | nucleus | 52.23 | 37.14 |
| CDX69561 | Canola | nucleus | 32.59 | 37.06 |
| CDY23616 | Canola | nucleus | 37.5 | 36.84 |
| CDY09882 | Canola | nucleus | 32.14 | 36.36 |
| CDY07085 | Canola | nucleus | 39.73 | 35.46 |
| CDY27055 | Canola | nucleus | 31.25 | 35.35 |
| CDX85583 | Canola | nucleus | 31.25 | 35.35 |
| CDX91023 | Canola | nucleus | 31.25 | 35.35 |
| CDY24177 | Canola | nucleus | 39.29 | 35.06 |
| CDY65324 | Canola | nucleus | 31.25 | 34.48 |
| CDY59254 | Canola | nucleus | 38.84 | 34.12 |
| CDY51833 | Canola | nucleus | 29.91 | 33.67 |
| CDY56151 | Canola | nucleus | 29.46 | 33.17 |
| HORVU4Hr1G018360.2 | Barley | nucleus | 53.57 | 32.88 |
| CDY49363 | Canola | nucleus | 37.95 | 32.57 |
| CDX84119 | Canola | nucleus | 37.95 | 32.57 |
| TraesCS4B01G096500.1 | Wheat | nucleus, plastid | 54.02 | 31.76 |
| CDY66972 | Canola | nucleus | 28.12 | 31.5 |
| CDY05636 | Canola | nucleus | 38.84 | 30.0 |
| CDX86461 | Canola | nucleus | 29.91 | 29.78 |
| CDY00035 | Canola | nucleus | 41.07 | 27.88 |
| CDY44571 | Canola | nucleus | 31.7 | 27.84 |
| CDX83327 | Canola | nucleus | 41.96 | 26.7 |
| CDX95725 | Canola | nucleus | 41.96 | 26.63 |
| CDY49609 | Canola | nucleus | 40.62 | 26.07 |
| CDX86237 | Canola | nucleus | 39.29 | 25.66 |
| CDX85403 | Canola | nucleus | 38.84 | 25.44 |
| CDY55384 | Canola | nucleus | 31.25 | 23.73 |
| CDX80105 | Canola | nucleus | 32.59 | 22.32 |
| CDY27486 | Canola | plastid | 4.46 | 4.24 |
Protein Annotations
| EnsemblPlants:CDX90721 | EnsemblPlantsGene:GSBRNA2T00151400001 | Gene3D:1.10.10.60 | GO:A0A078DN78 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF947 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDX90721 | ProteinID:CDX90721.1 |
| SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI00025402F0 | MapMan:15.5.2.1 | : |
Description
BnaA03g24010D
Coordinates
chrLK031864:+:141393..142503
Molecular Weight (calculated)
25012.4 Da
IEP (calculated)
9.454
GRAVY (calculated)
-0.799
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRSPCCEKA HTNKGAWTKE EDQRLIDYIR IHGEGSWRSL PKSAGLLRCG KSCRLRWINY LRPDLKRGNF SDEEDKVIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLSHG IDPQTHRPIK DSIAVENSFT VRPKTENSSG NVASTSGTTT DEDIRQNGDC YYNDNSGEKE VNLDLTLGSG STSLVRSGGR
201: SGNGSSADSK PWWDPVMAAR LSLL
101: DNEIKNYWNT HIKRKLLSHG IDPQTHRPIK DSIAVENSFT VRPKTENSSG NVASTSGTTT DEDIRQNGDC YYNDNSGEKE VNLDLTLGSG STSLVRSGGR
201: SGNGSSADSK PWWDPVMAAR LSLL
001: MGRSPCCEKA HTNKGAWTKE EDQRLVDYIR NHGEGCWRSL PKSAGLLRCG KSCRLRWINY LRPDLKRGNF TDDEDQIIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLSHG IDPQTHRQIN ESKTVSSQVV VPIQNDAVEY SFSNLAVKPK TENSSDNGAS TSGTTTDEDL RQNGECYYSD NSGHIKLNLD
201: LTLGFGSWSG RIVGVGSSAD SKPWCDPVME ARLSLL
101: DNEIKNYWNT HIKRKLLSHG IDPQTHRQIN ESKTVSSQVV VPIQNDAVEY SFSNLAVKPK TENSSDNGAS TSGTTTDEDL RQNGECYYSD NSGHIKLNLD
201: LTLGFGSWSG RIVGVGSSAD SKPWCDPVME ARLSLL
Arabidopsis Description
MYB6Transcription repressor MYB6 [Source:UniProtKB/Swiss-Prot;Acc:Q38851]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.