Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS3B01G416400.1 | Wheat | nucleus | 97.42 | 98.88 |
TraesCS3A01G384400.1 | Wheat | nucleus | 96.31 | 97.75 |
HORVU3Hr1G082210.1 | Barley | nucleus | 95.94 | 96.3 |
Zm00001d012255_P001 | Maize | nucleus | 75.65 | 81.67 |
GSMUA_AchrUn_... | Banana | nucleus | 43.17 | 78.52 |
EES01839 | Sorghum | nucleus | 77.86 | 78.44 |
Os01t0874300-01 | Rice | extracellular, nucleus | 81.92 | 77.35 |
Zm00001d042665_P001 | Maize | nucleus | 74.17 | 76.72 |
GSMUA_Achr3P22200_001 | Banana | nucleus | 60.15 | 75.12 |
GSMUA_Achr2P20600_001 | Banana | nucleus | 47.23 | 73.14 |
TraesCS1D01G268900.1 | Wheat | nucleus | 61.99 | 68.02 |
GSMUA_Achr5P26000_001 | Banana | nucleus | 49.82 | 64.29 |
GSMUA_Achr6P25420_001 | Banana | nucleus | 55.72 | 63.71 |
GSMUA_Achr6P07260_001 | Banana | mitochondrion | 46.13 | 62.81 |
GSMUA_Achr10P... | Banana | nucleus | 50.18 | 62.67 |
GSMUA_Achr8P32480_001 | Banana | nucleus | 43.54 | 59.0 |
TraesCS7D01G272400.1 | Wheat | nucleus | 50.92 | 58.97 |
GSMUA_Achr5P17010_001 | Banana | nucleus | 52.4 | 58.92 |
AT1G35515.1 | Thale cress | nucleus | 44.28 | 56.6 |
GSMUA_Achr9P08600_001 | Banana | nucleus | 54.61 | 54.41 |
CDX90721 | Canola | nucleus | 43.91 | 53.12 |
Bra000680.1-P | Field mustard | nucleus | 43.91 | 53.12 |
CDY05057 | Canola | nucleus | 43.54 | 51.98 |
TraesCS5D01G335700.1 | Wheat | nucleus | 50.92 | 51.88 |
AT4G09460.1 | Thale cress | nucleus | 45.02 | 51.69 |
TraesCS4D01G092900.1 | Wheat | nucleus | 53.51 | 50.17 |
Solyc06g065100.2.1 | Tomato | nucleus | 50.18 | 48.75 |
GSMUA_Achr6P12930_001 | Banana | nucleus | 50.92 | 48.25 |
KRH54016 | Soybean | nucleus | 53.14 | 47.84 |
PGSC0003DMT400080427 | Potato | nucleus | 50.18 | 47.72 |
VIT_07s0130g00040.t01 | Wine grape | nucleus | 50.18 | 46.9 |
KRH63931 | Soybean | nucleus | 52.03 | 46.69 |
TraesCS5D01G128200.2 | Wheat | nucleus | 51.66 | 45.75 |
TraesCS4D01G319800.1 | Wheat | nucleus | 29.89 | 36.16 |
TraesCS3D01G257800.1 | Wheat | nucleus | 34.32 | 34.32 |
TraesCS7D01G166500.1 | Wheat | nucleus | 31.73 | 34.13 |
TraesCS3D01G468400.1 | Wheat | nucleus | 33.21 | 33.96 |
TraesCS4D01G319700.1 | Wheat | nucleus | 30.26 | 33.74 |
TraesCS4D01G224500.1 | Wheat | nucleus | 28.04 | 32.9 |
TraesCS1D01G021700.1 | Wheat | nucleus | 33.95 | 29.3 |
TraesCS4D01G187100.1 | Wheat | nucleus | 33.95 | 26.59 |
TraesCS1D01G020900.1 | Wheat | nucleus | 31.73 | 25.37 |
Protein Annotations
EnsemblPlants:TraesCS3D01G377300.1 | EnsemblPlantsGene:TraesCS3D01G377300 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
PANTHER:PTHR10641:SF617 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr3D:+:492131279..492132558
Molecular Weight (calculated)
29507.0 Da
IEP (calculated)
8.902
GRAVY (calculated)
-0.542
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRSPCCEKA HTNKGAWTKE EDQRLIGYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWMNY LRPDLKRGNF TDDDDELIIK LHALLGNKWS LIAGQLPGRT
101: DNEIKNYWNT HIKRKLLNRG MDPHTHRPIS AAAAASGLTT STAAPVFPSS PAPASRLANA PFASFQSSTV SFARPSPSDD GHSSSGGSSD APRCPDLNLD
201: LDLDLSMSLP CSPPKTAPPA KSTPTSHQQQ GICLCYHLGV RNGEACTCKT ASPADPRVFR FLRPLEEGQY I
101: DNEIKNYWNT HIKRKLLNRG MDPHTHRPIS AAAAASGLTT STAAPVFPSS PAPASRLANA PFASFQSSTV SFARPSPSDD GHSSSGGSSD APRCPDLNLD
201: LDLDLSMSLP CSPPKTAPPA KSTPTSHQQQ GICLCYHLGV RNGEACTCKT ASPADPRVFR FLRPLEEGQY I
001: MGRSPCCEKA HTNKGAWTKE EDQRLVDYIR NHGEGCWRSL PKSAGLLRCG KSCRLRWINY LRPDLKRGNF TDDEDQIIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLSHG IDPQTHRQIN ESKTVSSQVV VPIQNDAVEY SFSNLAVKPK TENSSDNGAS TSGTTTDEDL RQNGECYYSD NSGHIKLNLD
201: LTLGFGSWSG RIVGVGSSAD SKPWCDPVME ARLSLL
101: DNEIKNYWNT HIKRKLLSHG IDPQTHRQIN ESKTVSSQVV VPIQNDAVEY SFSNLAVKPK TENSSDNGAS TSGTTTDEDL RQNGECYYSD NSGHIKLNLD
201: LTLGFGSWSG RIVGVGSSAD SKPWCDPVME ARLSLL
Arabidopsis Description
MYB6Transcription repressor MYB6 [Source:UniProtKB/Swiss-Prot;Acc:Q38851]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.