Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G021500.1 | Wheat | nucleus | 91.45 | 91.99 |
| TraesCS1D01G021700.1 | Wheat | nucleus | 61.36 | 66.24 |
| KRG94424 | Soybean | nucleus | 17.7 | 65.22 |
| TraesCS1B01G023400.1 | Wheat | nucleus | 61.36 | 64.8 |
| TraesCS1B01G049700.1 | Wheat | nucleus | 61.36 | 64.8 |
| TraesCS4D01G187100.1 | Wheat | nucleus | 66.08 | 64.74 |
| TraesCS1B01G023500.1 | Wheat | nucleus | 58.41 | 61.68 |
| Zm00001d028842_P001 | Maize | nucleus | 46.02 | 46.57 |
| Zm00001d047671_P001 | Maize | nucleus | 46.61 | 45.93 |
| EER92385 | Sorghum | nucleus | 46.9 | 44.66 |
| TraesCS7D01G272400.1 | Wheat | nucleus | 25.07 | 36.32 |
| TraesCS4D01G319800.1 | Wheat | nucleus | 23.89 | 36.16 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.33 | 35.31 |
| Solyc06g009710.2.1 | Tomato | nucleus | 30.68 | 35.02 |
| KRH31822 | Soybean | nucleus | 34.51 | 34.21 |
| TraesCS7D01G166500.1 | Wheat | nucleus | 25.37 | 34.13 |
| TraesCS3D01G468400.1 | Wheat | nucleus | 26.55 | 33.96 |
| PGSC0003DMT400011167 | Potato | nucleus | 26.84 | 33.7 |
| TraesCS1D01G268900.1 | Wheat | nucleus | 24.48 | 33.6 |
| TraesCS5D01G335700.1 | Wheat | nucleus | 26.25 | 33.46 |
| TraesCS4D01G224500.1 | Wheat | nucleus | 22.71 | 33.33 |
| PGSC0003DMT400018841 | Potato | nucleus | 29.79 | 33.33 |
| Solyc12g049350.1.1 | Tomato | nucleus | 28.61 | 33.11 |
| TraesCS4D01G319700.1 | Wheat | nucleus | 23.6 | 32.92 |
| GSMUA_Achr5P21250_001 | Banana | nucleus | 30.97 | 32.71 |
| GSMUA_Achr8P10470_001 | Banana | nucleus | 35.69 | 32.61 |
| KRH69237 | Soybean | nucleus | 35.4 | 32.34 |
| Bra036145.1-P | Field mustard | nucleus | 33.04 | 32.28 |
| AT3G62610.1 | Thale cress | nucleus | 32.45 | 32.07 |
| Bra037419.1-P | Field mustard | nucleus | 32.45 | 32.07 |
| VIT_07s0005g01210.t01 | Wine grape | nucleus | 34.51 | 31.88 |
| TraesCS3D01G377300.1 | Wheat | nucleus | 25.37 | 31.73 |
| AT5G49330.1 | Thale cress | nucleus | 31.56 | 31.29 |
| KRH37017 | Soybean | nucleus | 30.68 | 31.14 |
| KRH11988 | Soybean | nucleus | 30.09 | 30.91 |
| AT2G47460.1 | Thale cress | nucleus | 33.63 | 30.73 |
| KRG96503 | Soybean | nucleus | 31.86 | 30.51 |
| TraesCS4D01G092900.1 | Wheat | nucleus | 25.96 | 30.45 |
| KRH50769 | Soybean | nucleus | 30.09 | 30.27 |
| Bra000453.1-P | Field mustard | nucleus | 33.33 | 30.05 |
| Solyc01g079620.2.1 | Tomato | nucleus | 29.79 | 29.88 |
| KRH68241 | Soybean | nucleus | 31.56 | 29.8 |
| TraesCS3D01G257800.1 | Wheat | nucleus | 23.3 | 29.15 |
| PGSC0003DMT400023322 | Potato | nucleus | 30.68 | 28.65 |
| KRH02323 | Soybean | nucleus | 29.5 | 28.57 |
| TraesCS5D01G128200.2 | Wheat | nucleus | 25.66 | 28.43 |
| VIT_05s0077g01360.t01 | Wine grape | nucleus | 31.86 | 28.2 |
| Bra004456.1-P | Field mustard | nucleus | 28.32 | 26.3 |
| CDY27486 | Canola | plastid | 7.67 | 11.02 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G020900.1 | EnsemblPlantsGene:TraesCS1D01G020900 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb-rel_proteinP_C | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF203 | PFAM:PF00249 | PFAM:PF06640 | PFscan:PS51294 | SEG:seg |
| SMART:SM00717 | SUPFAM:SSF46689 | TIGR:cd00167 | MapMan:15.5.2.1 | : | : |
Description
No Description!
Coordinates
chr1D:-:8988723..8997868
Molecular Weight (calculated)
37990.6 Da
IEP (calculated)
6.699
GRAVY (calculated)
-0.669
Length
339 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRAPCCQKL GLKQGKWTME EDGILANYIA QHGEGSWRSL PKNAGLLRCG KSCRLRWLNY LRDGLRRGNF SKEEDDLIVK LHAIHGNRWS LIASHLPGRT
101: DNEIKNYWNL HLRRQFHSFK QTYTANNSTT ITIDINKLSA TNRKRRGGQA PGQSPRSGTK KHPVPKPAKP QDGSSPIGAT SSASCLPQSN QDQNQPINII
201: VSRTFGEPYS GNGLCHMVRE NIDQNGGVLE PNSAIDWIEL WEPNNSMNHI GLLEDESEME ALLSSIDLTT SGHSVIEHGG RSWLEDLLDM DMDWEGFVSH
301: LCGQSAQNDL LQTTTPHEMT GSELSKFEQF VSWLLSDEF
101: DNEIKNYWNL HLRRQFHSFK QTYTANNSTT ITIDINKLSA TNRKRRGGQA PGQSPRSGTK KHPVPKPAKP QDGSSPIGAT SSASCLPQSN QDQNQPINII
201: VSRTFGEPYS GNGLCHMVRE NIDQNGGVLE PNSAIDWIEL WEPNNSMNHI GLLEDESEME ALLSSIDLTT SGHSVIEHGG RSWLEDLLDM DMDWEGFVSH
301: LCGQSAQNDL LQTTTPHEMT GSELSKFEQF VSWLLSDEF
001: MGRSPCCEKA HMNKGAWTKE EDQLLVDYIR KHGEGCWRSL PRAAGLQRCG KSCRLRWMNY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLSRG IDPNSHRLIN ESVVSPSSLQ NDVVETIHLD FSGPVKPEPV REEIGMVNNC ESSGTTSEKD YGNEEDWVLN LELSVGPSYR
201: YESTRKVSVV DSAESTRRWG SELFGAHESD AVCLCCRIGL FRNESCRNCR VSDVRTH
101: DNEIKNYWNT HIKRKLLSRG IDPNSHRLIN ESVVSPSSLQ NDVVETIHLD FSGPVKPEPV REEIGMVNNC ESSGTTSEKD YGNEEDWVLN LELSVGPSYR
201: YESTRKVSVV DSAESTRRWG SELFGAHESD AVCLCCRIGL FRNESCRNCR VSDVRTH
Arabidopsis Description
MYB3MYB3 [Source:UniProtKB/TrEMBL;Acc:A0A178WFN1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.