Factsheet for TraesCS4D01G224500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G063760.1	Barley	nucleus	77.92	77.92
TraesCS4D01G319800.1	Wheat	nucleus	64.94	66.96
TraesCS4D01G319700.1	Wheat	nucleus	68.83	65.43
TraesCS7D01G166500.1	Wheat	nucleus	66.67	61.11
Zm00001d037118_P001	Maize	nucleus	58.87	49.82
Zm00001d044975_P001	Maize	nucleus	57.58	48.9
VIT_11s0016g01310.t01	Wine grape	nucleus	36.8	38.64
GSMUA_Achr9P27380_001	Banana	nucleus	42.42	37.69
GSMUA_Achr6P04400_001	Banana	nucleus	44.59	37.45
TraesCS3D01G468400.1	Wheat	nucleus	40.26	35.09
TraesCS7D01G272400.1	Wheat	nucleus	33.33	32.91
KRH47594	Soybean	nucleus	38.96	32.85
KRH02634	Soybean	nucleus	42.86	32.25
KRH19274	Soybean	nucleus	42.42	32.24
KRH06177	Soybean	nucleus	39.39	31.93
VIT_11s0016g01320.t01	Wine grape	nucleus	38.53	31.34
Bra035532.1-P	Field mustard	nucleus	35.06	31.15
CDY49363	Canola	nucleus	35.06	31.03
CDX84119	Canola	nucleus	35.06	31.03
TraesCS1D01G268900.1	Wheat	nucleus	32.9	30.77
TraesCS3D01G257800.1	Wheat	nucleus	35.5	30.26
TraesCS3D01G377300.1	Wheat	nucleus	32.9	28.04
TraesCS5D01G335700.1	Wheat	nucleus	32.03	27.82
TraesCS1D01G021700.1	Wheat	nucleus	36.8	27.07
AT5G35550.2	Thale cress	nucleus	29.87	26.44
TraesCS4D01G092900.1	Wheat	nucleus	32.03	25.61
Solyc12g049300.1.1	Tomato	nucleus	38.96	25.57
TraesCS5D01G128200.2	Wheat	nucleus	32.03	24.18
TraesCS4D01G187100.1	Wheat	nucleus	35.06	23.41
TraesCS1D01G020900.1	Wheat	nucleus	33.33	22.71
PGSC0003DMT400030322	Potato	nucleus	1.3	1.83

Protein Annotations

EnsemblPlants:TraesCS4D01G224500.1	EnsemblPlantsGene:TraesCS4D01G224500	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF459	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
TIGR:cd00167	MapMan:15.5.2.1	:	:	:	:

Description

No Description!

Coordinates

chr4D:-:381403684..381404442

Molecular Weight (calculated)

25025.4 Da

IEP (calculated)

10.160

GRAVY (calculated)

-0.610

Length

231 amino acids

Sequence
(BLAST)

001: MATEGVKRGA WTGKEDETLA SYVKAHGEGR WNEVPQRAGL RRCGKSCRLR WLNYLRPNIK RGNISNDEED TIVRLHALLG NRWSLIAGRL PGRTDNEIKN
101: YWNSTLGRKV LPAPHSATRM VATPDTSAGS GSYTEASASL SSSGPGTSDK AATPSPLPAT LWAPKPVRHT GHPFFLRDRP PPLPVAETRT VANGDACSGS
201: SSVTSEFPAV PPSLGSDDWM HEVRGLTFQK A

Best Arabidopsis Sequence Match ( AT2G16720.1 )
(BLAST)

001: MGRSPCCEKE HMNKGAWTKE EDERLVSYIK SHGEGCWRSL PRAAGLLRCG KSCRLRWINY LRPDLKRGNF THDEDELIIK LHSLLGNKWS LIAARLPGRT
101: DNEIKNYWNT HIKRKLLSKG IDPATHRGIN EAKISDLKKT KDQIVKDVSF VTKFEETDKS GDQKQNKYIR NGLVCKEERV VVEEKIGPDL NLELRISPPW
201: QNQREISTCT ASRFYMENDM ECSSETVKCQ TENSSSISYS SIDISSSNVG YDFLGLKTRI LDFRSLEMK

Arabidopsis Description

MYB7Transcription factor MYB7 [Source:UniProtKB/Swiss-Prot;Acc:Q42379]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.