Factsheet for VIT_11s0016g01310.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g02650.t01	Wine grape	nucleus	38.18	50.91
TraesCS3B01G515900.1	Wheat	nucleus	45.0	48.53
VIT_11s0016g01320.t01	Wine grape	nucleus	60.0	46.48
VIT_04s0008g01870.t01	Wine grape	nucleus	38.64	43.15
VIT_04s0008g01800.t01	Wine grape	nucleus	51.82	43.02
HORVU3Hr1G100500.1	Barley	nucleus	49.09	42.35
TraesCS3D01G468400.1	Wheat	nucleus	49.55	41.13
TraesCS4D01G319800.1	Wheat	nucleus	41.82	41.07
VIT_09s0002g01380.t01	Wine grape	nucleus	37.73	40.89
GSMUA_Achr3P07940_001	Banana	nucleus	50.91	39.72
GSMUA_Achr8P22690_001	Banana	nucleus	52.27	39.66
VIT_13s0084g00530.t01	Wine grape	nucleus	47.27	39.54
GSMUA_Achr9P16040_001	Banana	nucleus	45.91	39.3
TraesCS4D01G319700.1	Wheat	nucleus	43.18	39.09
TraesCS5A01G495500.1	Wheat	nucleus	42.27	38.43
VIT_04s0008g01840.t01	Wine grape	nucleus	39.09	38.05
TraesCS4B01G323300.1	Wheat	nucleus	42.27	37.96
VIT_04s0008g01820.t01	Wine grape	nucleus	50.91	37.71
Bra035532.1-P	Field mustard	nucleus	44.55	37.69
CDY49363	Canola	nucleus	44.55	37.55
TraesCS7B01G070400.1	Wheat	nucleus	43.18	37.4
TraesCS7D01G166500.1	Wheat	nucleus	42.73	37.3
CDX84119	Canola	nucleus	44.09	37.16
VIT_18s0117g00200.t01	Wine grape	nucleus	39.09	36.91
VIT_01s0011g04760.t01	Wine grape	nucleus	37.73	36.89
TraesCS4D01G224500.1	Wheat	nucleus	38.64	36.8
EER92144	Sorghum	nucleus	49.09	36.73
TraesCS7A01G165700.1	Wheat	nucleus	43.18	36.26
VIT_17s0000g02660.t01	Wine grape	nucleus	37.73	36.24
VIT_11s0016g01300.t01	Wine grape	nucleus	49.09	35.88
VIT_11s0016g05660.t01	Wine grape	nucleus	36.36	35.87
HORVU4Hr1G082610.1	Barley	nucleus	42.27	35.5
VIT_14s0006g01620.t01	Wine grape	nucleus	36.36	35.09
Zm00001d044975_P001	Maize	nucleus	42.73	34.56
VIT_11s0016g05690.t01	Wine grape	nucleus	35.0	34.53
Zm00001d037118_P001	Maize	nucleus	42.73	34.43
VIT_04s0008g01810.t01	Wine grape	nucleus	43.18	34.42
HORVU7Hr1G034630.1	Barley	nucleus	41.82	34.33
HORVU4Hr1G063760.1	Barley	nucleus	35.91	34.2
VIT_04s0023g03710.t01	Wine grape	nucleus	37.27	33.88
VIT_03s0038g02310.t01	Wine grape	nucleus	38.18	33.47
VIT_18s0117g00210.t01	Wine grape	nucleus	38.64	32.95
VIT_17s0000g08480.t01	Wine grape	nucleus	31.82	32.41
AT5G35550.2	Thale cress	nucleus	38.18	32.18
VIT_09s0002g01400.t01	Wine grape	nucleus	50.0	32.07
VIT_14s0066g01220.t01	Wine grape	nucleus	30.91	31.34
VIT_15s0046g00170.t01	Wine grape	nucleus	40.45	31.12
VIT_04s0008g01830.t01	Wine grape	nucleus	39.55	30.85
VIT_01s0127g00730.t01	Wine grape	nucleus	30.0	30.0
VIT_09s0002g01410.t01	Wine grape	nucleus	39.55	29.39
VIT_07s0130g00040.t01	Wine grape	nucleus	37.73	28.62
VIT_06s0004g00570.t01	Wine grape	nucleus, plastid	37.73	26.6
VIT_08s0007g07230.t01	Wine grape	nucleus	37.73	25.94
VIT_07s0005g01210.t01	Wine grape	nucleus	38.18	22.89
VIT_05s0077g01360.t01	Wine grape	nucleus	37.73	21.67

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100250940	wikigene:100250940	MapMan:15.5.2.1	ProteinID:CCB51410	ProteinID:CCB51410.1
UniProt:F6HGP5	EMBL:FN595756	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
EntrezGene:LOC100250940	wikigene:LOC100250940	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF459	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00021081ED	ArrayExpress:VIT_11s0016g01310
EnsemblPlantsGene:VIT_11s0016g01310	EnsemblPlants:VIT_11s0016g01310.t01	RefSeq:XP_002278229	RefSeq:XP_002278229.2	SEG:seg	:

Description

No Description!

Coordinates

chr11:-:1055765..1057645

Molecular Weight (calculated)

25173.1 Da

IEP (calculated)

10.041

GRAVY (calculated)

-0.766

Length

220 amino acids

Sequence
(BLAST)

001: MGRKPYCVKE GLNRGTWSAL EDKILCNYIE IYGEGKWKEV PPRAGLKRCG KSCRLRWLNY LRPDIKRGNI SEDEEELIIK LHKLLGNRWS LIAGRLPGRT
101: DNEIKNYWNT NLKKKLLPQH SPHKQRTKFK SNTPLPRNSS SHHTVIRTKA VRCMQLDFSH AFPTRSQPGT LCPPDFDMGQ VFGSDGFSSF FHPSEGMTED
201: NNVVGGDLPS SWPELSFSTK

Best Arabidopsis Sequence Match ( AT5G35550.1 )
(BLAST)

001: MGKRATTSVR REELNRGAWT DHEDKILRDY ITTHGEGKWS TLPNQAGLKR CGKSCRLRWK NYLRPGIKRG NISSDEEELI IRLHNLLGNR WSLIAGRLPG
101: RTDNEIKNHW NSNLRKRLPK TQTKQPKRIK HSTNNENNVC VIRTKAIRCS KTLLFSDLSL QKKSSTSPLP LKEQEMDQGG SSLMGDLEFD FDRIHSEFHF
201: PDLMDFDGLD CGNVTSLVSS NEILGELVPA QGNLDLNRPF TSCHHRGDDE DWLRDFTC

Arabidopsis Description

TT2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT5G35550]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.