Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g096200.1.1 | Tomato | nucleus | 31.12 | 71.2 |
| KRG97208 | Soybean | nucleus | 58.04 | 59.07 |
| KRH68929 | Soybean | nucleus | 47.55 | 55.51 |
| PGSC0003DMT400085829 | Potato | nucleus | 34.27 | 52.97 |
| VIT_17s0000g02650.t01 | Wine grape | nucleus | 30.42 | 52.73 |
| VIT_04s0023g03710.t01 | Wine grape | nucleus | 37.76 | 44.63 |
| VIT_04s0008g01870.t01 | Wine grape | nucleus | 29.72 | 43.15 |
| VIT_03s0038g02310.t01 | Wine grape | nucleus | 37.76 | 43.03 |
| PGSC0003DMT400031607 | Potato | nucleus | 39.86 | 41.76 |
| VIT_01s0011g04760.t01 | Wine grape | nucleus | 32.52 | 41.33 |
| VIT_14s0006g01620.t01 | Wine grape | nucleus | 32.87 | 41.23 |
| KRH47884 | Soybean | nucleus | 41.61 | 41.03 |
| VIT_09s0002g01380.t01 | Wine grape | nucleus | 29.02 | 40.89 |
| VIT_11s0016g01310.t01 | Wine grape | nucleus | 31.12 | 40.45 |
| KRH06443 | Soybean | nucleus | 41.26 | 40.27 |
| VIT_17s0000g02660.t01 | Wine grape | nucleus | 32.17 | 40.17 |
| Solyc08g082890.2.1 | Tomato | nucleus | 39.16 | 39.58 |
| Solyc08g005870.1.1 | Tomato | nucleus | 39.16 | 39.58 |
| VIT_18s0117g00200.t01 | Wine grape | nucleus | 32.17 | 39.48 |
| Solyc08g008480.2.1 | Tomato | nucleus | 43.71 | 39.19 |
| VIT_04s0008g01800.t01 | Wine grape | nucleus | 35.31 | 38.11 |
| VIT_04s0008g01840.t01 | Wine grape | nucleus | 30.07 | 38.05 |
| VIT_18s0117g00210.t01 | Wine grape | nucleus | 34.27 | 37.98 |
| PGSC0003DMT400014983 | Potato | nucleus | 42.31 | 37.46 |
| VIT_11s0016g05660.t01 | Wine grape | nucleus | 28.32 | 36.32 |
| VIT_14s0066g01220.t01 | Wine grape | nucleus | 27.27 | 35.94 |
| VIT_13s0084g00530.t01 | Wine grape | nucleus | 32.87 | 35.74 |
| VIT_17s0000g08480.t01 | Wine grape | nucleus | 26.92 | 35.65 |
| VIT_06s0004g00570.t01 | Wine grape | nucleus, plastid | 38.81 | 35.58 |
| VIT_07s0130g00040.t01 | Wine grape | nucleus | 36.01 | 35.52 |
| VIT_11s0016g05690.t01 | Wine grape | nucleus | 26.92 | 34.53 |
| VIT_11s0016g01320.t01 | Wine grape | nucleus | 34.27 | 34.51 |
| VIT_08s0007g07230.t01 | Wine grape | nucleus | 38.11 | 34.06 |
| VIT_01s0127g00730.t01 | Wine grape | nucleus | 25.87 | 33.64 |
| VIT_04s0008g01820.t01 | Wine grape | nucleus | 34.62 | 33.33 |
| VIT_04s0008g01810.t01 | Wine grape | nucleus | 31.82 | 32.97 |
| VIT_11s0016g01300.t01 | Wine grape | nucleus | 34.62 | 32.89 |
| VIT_09s0002g01410.t01 | Wine grape | nucleus | 31.82 | 30.74 |
| VIT_04s0008g01830.t01 | Wine grape | nucleus | 29.72 | 30.14 |
| VIT_09s0002g01400.t01 | Wine grape | nucleus | 36.01 | 30.03 |
| VIT_07s0005g01210.t01 | Wine grape | nucleus | 34.97 | 27.25 |
| VIT_05s0077g01360.t01 | Wine grape | nucleus | 34.97 | 26.11 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100232899 | wikigene:100232899 | MapMan:15.5.2.1 | ProteinID:ABC54962 | ProteinID:ABC54962.1 |
| EMBL:AM259485 | ProteinID:CAJ90831 | ProteinID:CAJ90831.1 | ProteinID:CCB62554 | ProteinID:CCB62554.1 | EMBL:DQ277655 |
| UniProt:F6I6F8 | EMBL:FN596755 | GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 |
| EntrezGene:MYBPA1 | wikigene:MYBPA1 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF613 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | TIGR:TC54724 | UniParc:UPI0001986311 |
| ArrayExpress:VIT_15s0046g00170 | EnsemblPlantsGene:VIT_15s0046g00170 | EnsemblPlants:VIT_15s0046g00170.t01 | unigene:Vvi.12591 | unigene:Vvi.23373 | unigene:Vvi.5761 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr15:+:17211757..17213117
Molecular Weight (calculated)
32188.9 Da
IEP (calculated)
9.595
GRAVY (calculated)
-0.900
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRAPCCSKV GLHRGSWTAR EDTLLTKYIQ AHGEGHWRSL PKKAGLLRCG KSCRLRWMNY LRPDIKRGNI TPDEDDLIIR LHSLLGNRWS LIAGRLPGRT
101: DNEIKNYWNT HLSKKLRSQG TDPNTHKKMT EPPEPKRRKN TRTRTNNGGG SKRVKISKDE ENSNHKVHLP KPVRVTSLIS MSRNNSFESN TVSGGSGSSS
201: GGNGESLPWP SFRDIRDDKV IGVDGVDFFI GDDQGQDLVA SSDPESQSHM PPTDNSLDKL YEEYLQLLER EDTQVQLDSF AESLLI
101: DNEIKNYWNT HLSKKLRSQG TDPNTHKKMT EPPEPKRRKN TRTRTNNGGG SKRVKISKDE ENSNHKVHLP KPVRVTSLIS MSRNNSFESN TVSGGSGSSS
201: GGNGESLPWP SFRDIRDDKV IGVDGVDFFI GDDQGQDLVA SSDPESQSHM PPTDNSLDKL YEEYLQLLER EDTQVQLDSF AESLLI
001: MMSCGGKKPV SKKTTPCCTK MGMKRGPWTV EEDEILVSFI KKEGEGRWRS LPKRAGLLRC GKSCRLRWMN YLRPSVKRGG ITSDEEDLIL RLHRLLGNRW
101: SLIAGRIPGR TDNEIKNYWN THLRKKLLRQ GIDPQTHKPL DANNIHKPEE EVSGGQKYPL EPISSSHTDD TTVNGGDGDS KNSINVFGGE HGYEDFGFCY
201: DDKFSSFLNS LINDVGDPFG NIIPISQPLQ MDDCKDGIVG ASSSSLGHD
101: SLIAGRIPGR TDNEIKNYWN THLRKKLLRQ GIDPQTHKPL DANNIHKPEE EVSGGQKYPL EPISSSHTDD TTVNGGDGDS KNSINVFGGE HGYEDFGFCY
201: DDKFSSFLNS LINDVGDPFG NIIPISQPLQ MDDCKDGIVG ASSSSLGHD
Arabidopsis Description
MYB5MYB5 [Source:UniProtKB/TrEMBL;Acc:A0A178VAR4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.