Factsheet for VIT_04s0008g01800.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0016g01310.t01	Wine grape	nucleus	43.02	51.82
VIT_17s0000g02650.t01	Wine grape	nucleus	31.7	50.91
VIT_11s0016g01300.t01	Wine grape	nucleus	51.32	45.18
VIT_13s0084g00530.t01	Wine grape	nucleus	44.53	44.87
VIT_04s0008g01870.t01	Wine grape	nucleus	32.83	44.16
VIT_09s0002g01380.t01	Wine grape	nucleus	32.83	42.86
VIT_04s0008g01840.t01	Wine grape	nucleus	36.23	42.48
VIT_11s0016g01320.t01	Wine grape	nucleus	45.28	42.25
VIT_04s0008g01820.t01	Wine grape	nucleus	47.17	42.09
VIT_04s0008g01810.t01	Wine grape	nucleus	42.64	40.94
VIT_09s0002g01400.t01	Wine grape	nucleus	50.57	39.07
VIT_04s0023g03710.t01	Wine grape	nucleus	35.47	38.84
VIT_14s0006g01620.t01	Wine grape	nucleus	32.83	38.16
VIT_03s0038g02310.t01	Wine grape	nucleus	35.47	37.45
VIT_01s0011g04760.t01	Wine grape	nucleus	31.7	37.33
VIT_11s0016g05660.t01	Wine grape	nucleus	31.32	37.22
VIT_18s0117g00200.t01	Wine grape	nucleus	32.45	36.91
VIT_17s0000g02660.t01	Wine grape	nucleus	31.7	36.68
VIT_17s0000g08480.t01	Wine grape	nucleus	29.81	36.57
VIT_04s0008g01830.t01	Wine grape	nucleus	38.87	36.52
GSMUA_Achr7P18550_001	Banana	nucleus	36.23	36.36
VIT_11s0016g05690.t01	Wine grape	nucleus	29.81	35.43
VIT_15s0046g00170.t01	Wine grape	nucleus	38.11	35.31
VIT_14s0066g01220.t01	Wine grape	nucleus	28.68	35.02
Solyc12g049300.1.1	Tomato	nucleus	46.04	34.66
GSMUA_Achr7P18560_001	Banana	nucleus	35.09	34.57
VIT_18s0117g00210.t01	Wine grape	nucleus	33.21	34.11
VIT_01s0127g00730.t01	Wine grape	nucleus	26.79	32.27
VIT_09s0002g01410.t01	Wine grape	nucleus	35.85	32.09
VIT_07s0130g00040.t01	Wine grape	nucleus	34.72	31.72
VIT_06s0004g00570.t01	Wine grape	nucleus, plastid	33.96	28.85
VIT_08s0007g07230.t01	Wine grape	nucleus	33.96	28.12
GSMUA_Achr6P02530_001	Banana	nucleus	35.47	26.04
VIT_07s0005g01210.t01	Wine grape	nucleus	35.85	25.89
VIT_05s0077g01360.t01	Wine grape	nucleus	35.47	24.54
PGSC0003DMT400030322	Potato	nucleus	3.77	6.1

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100264614	wikigene:100264614	MapMan:15.5.2.1	EMBL:AM456788	ProteinID:CAN78909
ProteinID:CAN78909.1	ProteinID:CBI20713	ProteinID:CBI20713.3	UniProt:D7STW4	EMBL:FN595231	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100264614	wikigene:LOC100264614	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF459	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI00015C8D7E	ArrayExpress:VIT_04s0008g01800	EnsemblPlantsGene:VIT_04s0008g01800	EnsemblPlants:VIT_04s0008g01800.t01	unigene:Vvi.21629
RefSeq:XP_002279854	RefSeq:XP_002279854.2	RefSeq:XP_010648383.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:-:1418835..1420461

Molecular Weight (calculated)

29902.4 Da

IEP (calculated)

9.003

GRAVY (calculated)

-0.768

Length

265 amino acids

Sequence
(BLAST)

001: MGRSPCCSKE GLNRGAWTAL EDKILTAYIK AHGEGKWRNL PKRAGLKRCG KSCRLRWLNY LRPDIKRGNI SHDEEELIIR LHKLLGNRWS LIAGRLPGRT
101: DNEIKNYWNT TLGKKIGAQP TNQSRLKSKP PIDHKPTAIE PEAAPAQPQV IRTKATRCTK VLVPTDPPPR LSEPRPIDST TPQNPLQAQP QQTHSVAPWG
201: PTDFTPDYGT ITNSNLFNED YSYSNLLENV TPFKFEDWAS NDCLENNAAL DLDSLAFLLN SEEWP

Best Arabidopsis Sequence Match ( AT5G35550.1 )
(BLAST)

001: MGKRATTSVR REELNRGAWT DHEDKILRDY ITTHGEGKWS TLPNQAGLKR CGKSCRLRWK NYLRPGIKRG NISSDEEELI IRLHNLLGNR WSLIAGRLPG
101: RTDNEIKNHW NSNLRKRLPK TQTKQPKRIK HSTNNENNVC VIRTKAIRCS KTLLFSDLSL QKKSSTSPLP LKEQEMDQGG SSLMGDLEFD FDRIHSEFHF
201: PDLMDFDGLD CGNVTSLVSS NEILGELVPA QGNLDLNRPF TSCHHRGDDE DWLRDFTC

Arabidopsis Description

TT2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT5G35550]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.