Factsheet for VIT_08s0007g07230.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g03450.t01
VIT_07s0104g00090.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13540.1	VIT_02s0025g03450.t01	AT1G63650.1	15361138
AT3G13540.1	VIT_07s0104g00090.t01	AT4G09820.1	15361138

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g00570.t01	Wine grape	nucleus, plastid	60.94	62.5
CDY23616	Canola	nucleus	39.69	55.7
CDY59254	Canola	nucleus	42.5	53.33
AT3G13540.1	Thale cress	nucleus	41.25	53.01
CDY24177	Canola	nucleus	41.56	52.99
Bra027423.1-P	Field mustard	nucleus	42.19	52.94
CDY07085	Canola	nucleus	41.25	52.59
Bra039395.1-P	Field mustard	nucleus	40.94	52.19
VIT_17s0000g02650.t01	Wine grape	nucleus	26.56	51.52
Solyc01g005660.1.1	Tomato	nucleus, plastid	48.75	50.65
GSMUA_Achr10P...	Banana	nucleus	46.56	50.0
GSMUA_Achr6P14840_001	Banana	nucleus	45.31	50.0
Zm00001d011645_P001	Maize	nucleus	35.0	48.7
GSMUA_Achr2P19380_001	Banana	nucleus	36.88	48.36
TraesCS3A01G257800.1	Wheat	nucleus	39.38	47.55
KRH17997	Soybean	nucleus, plastid	51.88	46.89
TraesCS3D01G257800.1	Wheat	nucleus	39.69	46.86
TraesCS3B01G290600.1	Wheat	nucleus	39.69	46.69
Os01t0695900-01	Rice	nucleus	38.12	44.36
KRH16413	Soybean	nucleus	50.0	44.32
HORVU0Hr1G006810.2	Barley	nucleus	36.56	43.66
KXG33190	Sorghum	nucleus	38.12	43.57
VIT_14s0066g01220.t01	Wine grape	nucleus	29.06	42.86
GSMUA_Achr7P13700_001	Banana	nucleus	40.94	42.67
VIT_01s0011g04760.t01	Wine grape	nucleus	29.69	42.22
VIT_04s0008g01870.t01	Wine grape	nucleus	25.94	42.13
VIT_14s0006g01620.t01	Wine grape	nucleus	29.06	40.79
VIT_17s0000g08480.t01	Wine grape	nucleus	27.5	40.74
VIT_03s0038g02310.t01	Wine grape	nucleus	30.94	39.44
VIT_09s0002g01380.t01	Wine grape	nucleus	25.0	39.41
VIT_18s0117g00200.t01	Wine grape	nucleus	28.12	38.63
VIT_17s0000g02660.t01	Wine grape	nucleus	27.5	38.43
VIT_15s0046g00170.t01	Wine grape	nucleus	34.06	38.11
VIT_04s0023g03710.t01	Wine grape	nucleus	28.75	38.02
VIT_11s0016g01310.t01	Wine grape	nucleus	25.94	37.73
VIT_01s0127g00730.t01	Wine grape	nucleus	25.62	37.27
GSMUA_Achr5P06530_001	Banana	nucleus	42.5	36.27
VIT_11s0016g05660.t01	Wine grape	nucleus	25.0	35.87
VIT_04s0008g01840.t01	Wine grape	nucleus	25.0	35.4
VIT_11s0016g05690.t01	Wine grape	nucleus	24.06	34.53
VIT_04s0008g01800.t01	Wine grape	nucleus	28.12	33.96
VIT_18s0117g00210.t01	Wine grape	nucleus	27.19	33.72
VIT_13s0084g00530.t01	Wine grape	nucleus	26.56	32.32
VIT_07s0130g00040.t01	Wine grape	nucleus	29.06	32.07
VIT_11s0016g01300.t01	Wine grape	nucleus	29.38	31.23
VIT_04s0008g01810.t01	Wine grape	nucleus	26.88	31.16
VIT_11s0016g01320.t01	Wine grape	nucleus	27.5	30.99
VIT_04s0008g01830.t01	Wine grape	nucleus	27.19	30.85
VIT_09s0002g01410.t01	Wine grape	nucleus	27.5	29.73
VIT_04s0008g01820.t01	Wine grape	nucleus	26.88	28.96
VIT_09s0002g01400.t01	Wine grape	nucleus	29.69	27.7
VIT_07s0005g01210.t01	Wine grape	nucleus	26.25	22.89
VIT_05s0077g01360.t01	Wine grape	nucleus	26.88	22.45

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100233122	wikigene:100233122	MapMan:15.5.2.1	ProteinID:AAS68190	ProteinID:AAS68190.1
ProteinID:ABC54979	ProteinID:ABC54979.1	ProteinID:ABC54992	ProteinID:ABC54992.1	ProteinID:ABC54993	ProteinID:ABC54993.1
EMBL:AY555190	ProteinID:CCB55208	ProteinID:CCB55208.1	EMBL:DQ277673	EMBL:DQ277687	EMBL:DQ277688
UniProt:F6HLE7	EMBL:FN595991	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
EntrezGene:MYBCS1	wikigene:MYBCS1	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF740	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGR:TC61919	UniParc:UPI00015CA6BF
ArrayExpress:VIT_08s0007g07230	EnsemblPlantsGene:VIT_08s0007g07230	EnsemblPlants:VIT_08s0007g07230.t01	unigene:Vvi.17639	SEG:seg	:

Description

No Description!

Coordinates

chr8:-:20865377..20866905

Molecular Weight (calculated)

35675.5 Da

IEP (calculated)

7.407

GRAVY (calculated)

-0.892

Length

320 amino acids

Sequence
(BLAST)

001: MRNPASASTS KTPCCTKVGL KRGPWTPEED ELLANYVKRE GEGRWRTLPK RAGLLRCGKS CRLRWMNYLR PSVKRGQIAP DEEDLILRLH RLLGNRWSLI
101: AGRIPGRTDN EIKNYWNTHL SKKLISQGID PRTHKPLNPK PNPSPDVNAP VSKSIPNANP NPSSSRVGEI GSNHEVKEIE SNENHKEPPN LDQYHSPLAA
201: DSNENWQSAD GLVTGLQSTH GTSNDDEDDI GFCNDDTFSS FLNSLINEDV FGNHNHHHQQ QQQQQLQQLQ QPSNVIAPLP HPAISVQATF SSSPRTVWEP
301: AALTSTSAPL VHDQKDSMSP

Best Arabidopsis Sequence Match ( AT3G13540.1 )
(BLAST)

001: MMSCGGKKPV SKKTTPCCTK MGMKRGPWTV EEDEILVSFI KKEGEGRWRS LPKRAGLLRC GKSCRLRWMN YLRPSVKRGG ITSDEEDLIL RLHRLLGNRW
101: SLIAGRIPGR TDNEIKNYWN THLRKKLLRQ GIDPQTHKPL DANNIHKPEE EVSGGQKYPL EPISSSHTDD TTVNGGDGDS KNSINVFGGE HGYEDFGFCY
201: DDKFSSFLNS LINDVGDPFG NIIPISQPLQ MDDCKDGIVG ASSSSLGHD

Arabidopsis Description

MYB5MYB5 [Source:UniProtKB/TrEMBL;Acc:A0A178VAR4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.