Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_02s0025g03450.t01 | |
| VIT_07s0104g00090.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G13540.1 | VIT_02s0025g03450.t01 | AT1G63650.1 | 15361138 |
| AT3G13540.1 | VIT_07s0104g00090.t01 | AT4G09820.1 | 15361138 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_08s0007g07230.t01 | Wine grape | nucleus | 62.5 | 60.94 |
| CDY23616 | Canola | nucleus | 40.71 | 55.7 |
| AT3G13540.1 | Thale cress | nucleus | 42.63 | 53.41 |
| GSMUA_Achr10P... | Banana | nucleus | 50.96 | 53.36 |
| CDY24177 | Canola | nucleus | 42.63 | 52.99 |
| Solyc01g005660.1.1 | Tomato | nucleus, plastid | 52.24 | 52.92 |
| VIT_17s0000g02650.t01 | Wine grape | nucleus | 27.88 | 52.73 |
| CDY59254 | Canola | nucleus | 42.95 | 52.55 |
| CDY07085 | Canola | nucleus | 41.99 | 52.19 |
| Bra027423.1-P | Field mustard | nucleus | 42.63 | 52.16 |
| Bra039395.1-P | Field mustard | nucleus | 41.67 | 51.79 |
| GSMUA_Achr2P19380_001 | Banana | nucleus | 39.74 | 50.82 |
| GSMUA_Achr6P14840_001 | Banana | nucleus | 47.12 | 50.69 |
| Zm00001d011645_P001 | Maize | nucleus | 35.58 | 48.26 |
| TraesCS3A01G257800.1 | Wheat | nucleus | 40.06 | 47.17 |
| TraesCS3B01G290600.1 | Wheat | nucleus | 41.03 | 47.06 |
| TraesCS3D01G257800.1 | Wheat | nucleus | 40.71 | 46.86 |
| KXG33190 | Sorghum | nucleus | 39.74 | 44.29 |
| HORVU0Hr1G006810.2 | Barley | nucleus | 37.82 | 44.03 |
| GSMUA_Achr7P13700_001 | Banana | nucleus | 42.95 | 43.65 |
| Os01t0695900-01 | Rice | nucleus | 38.14 | 43.27 |
| VIT_14s0066g01220.t01 | Wine grape | nucleus | 29.81 | 42.86 |
| VIT_01s0011g04760.t01 | Wine grape | nucleus | 30.45 | 42.22 |
| VIT_04s0008g01870.t01 | Wine grape | nucleus | 26.28 | 41.62 |
| VIT_17s0000g08480.t01 | Wine grape | nucleus | 28.21 | 40.74 |
| VIT_14s0006g01620.t01 | Wine grape | nucleus | 29.17 | 39.91 |
| VIT_09s0002g01380.t01 | Wine grape | nucleus | 25.96 | 39.9 |
| VIT_03s0038g02310.t01 | Wine grape | nucleus | 31.41 | 39.04 |
| VIT_15s0046g00170.t01 | Wine grape | nucleus | 35.58 | 38.81 |
| VIT_04s0023g03710.t01 | Wine grape | nucleus | 29.81 | 38.43 |
| VIT_18s0117g00200.t01 | Wine grape | nucleus | 28.53 | 38.2 |
| VIT_17s0000g02660.t01 | Wine grape | nucleus | 27.88 | 37.99 |
| VIT_11s0016g01310.t01 | Wine grape | nucleus | 26.6 | 37.73 |
| GSMUA_Achr5P06530_001 | Banana | nucleus | 43.91 | 36.53 |
| VIT_01s0127g00730.t01 | Wine grape | nucleus | 25.32 | 35.91 |
| VIT_11s0016g05660.t01 | Wine grape | nucleus | 25.0 | 34.98 |
| VIT_18s0117g00210.t01 | Wine grape | nucleus | 28.21 | 34.11 |
| VIT_04s0008g01840.t01 | Wine grape | nucleus | 24.68 | 34.07 |
| VIT_04s0008g01800.t01 | Wine grape | nucleus | 28.85 | 33.96 |
| VIT_07s0130g00040.t01 | Wine grape | nucleus | 31.41 | 33.79 |
| VIT_11s0016g05690.t01 | Wine grape | nucleus | 23.4 | 32.74 |
| VIT_13s0084g00530.t01 | Wine grape | nucleus | 27.56 | 32.7 |
| VIT_11s0016g01300.t01 | Wine grape | nucleus | 30.13 | 31.23 |
| VIT_04s0008g01810.t01 | Wine grape | nucleus | 27.56 | 31.16 |
| VIT_11s0016g01320.t01 | Wine grape | nucleus | 28.21 | 30.99 |
| VIT_04s0008g01830.t01 | Wine grape | nucleus | 27.88 | 30.85 |
| VIT_09s0002g01410.t01 | Wine grape | nucleus | 28.85 | 30.41 |
| VIT_04s0008g01820.t01 | Wine grape | nucleus | 27.88 | 29.29 |
| VIT_09s0002g01400.t01 | Wine grape | nucleus | 30.77 | 27.99 |
| VIT_07s0005g01210.t01 | Wine grape | nucleus | 29.17 | 24.8 |
| VIT_05s0077g01360.t01 | Wine grape | nucleus | 28.21 | 22.98 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100232973 | wikigene:100232973 | MapMan:15.5.2.1 | ProteinID:AAX51291 | ProteinID:AAX51291.1 |
| EMBL:AY899404 | ProteinID:CCB43804 | ProteinID:CCB43804.1 | UniProt:F6GUM7 | EMBL:FN594951 | GO:GO:0000981 |
| GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006357 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 |
| GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | EntrezGene:LOC100232973 | wikigene:LOC100232973 | InterPro:Myb_dom |
| PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF740 | InterPro:SANT/Myb | SMART:SM00717 |
| SUPFAM:SSF46689 | TIGR:TC66581 | UniParc:UPI00015C7EF8 | ArrayExpress:VIT_06s0004g00570 | EnsemblPlantsGene:VIT_06s0004g00570 | EnsemblPlants:VIT_06s0004g00570.t01 |
| unigene:Vvi.24368 | RefSeq:XP_003632120 | RefSeq:XP_003632120.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr6:+:744515..745967
Molecular Weight (calculated)
34094.7 Da
IEP (calculated)
9.225
GRAVY (calculated)
-0.798
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: MRNASSASAP PSSSSKTPCC IKVGLKRGPW TPEEDEVLAN YIKKEGEGRW RTLPKRAGLL RCGKSCRLRW MNYLRPSVKR GQIAPDEEDL ILRLHRLLGN
101: RWALIAGRIP GRTDNEIKNY WNTHLSKKLI SQGIDPRTHK PLNPNSSVDV KASSSKAKAV MNPNPNPNPN PSPSEKAAAN KEAGNFKSDN QYQIGAAGND
201: GSANIQNSDG SGTGLRSSNN EEDDDLNCGT DDVFSSFLNS LINEDLFPGQ HHLQQQHHGG LIAPGSDALI STSSVQSFGF GTSWEAAAMT STSAFSQIDH
301: SKRFNDQPDK RF
101: RWALIAGRIP GRTDNEIKNY WNTHLSKKLI SQGIDPRTHK PLNPNSSVDV KASSSKAKAV MNPNPNPNPN PSPSEKAAAN KEAGNFKSDN QYQIGAAGND
201: GSANIQNSDG SGTGLRSSNN EEDDDLNCGT DDVFSSFLNS LINEDLFPGQ HHLQQQHHGG LIAPGSDALI STSSVQSFGF GTSWEAAAMT STSAFSQIDH
301: SKRFNDQPDK RF
001: MMSCGGKKPV SKKTTPCCTK MGMKRGPWTV EEDEILVSFI KKEGEGRWRS LPKRAGLLRC GKSCRLRWMN YLRPSVKRGG ITSDEEDLIL RLHRLLGNRW
101: SLIAGRIPGR TDNEIKNYWN THLRKKLLRQ GIDPQTHKPL DANNIHKPEE EVSGGQKYPL EPISSSHTDD TTVNGGDGDS KNSINVFGGE HGYEDFGFCY
201: DDKFSSFLNS LINDVGDPFG NIIPISQPLQ MDDCKDGIVG ASSSSLGHD
101: SLIAGRIPGR TDNEIKNYWN THLRKKLLRQ GIDPQTHKPL DANNIHKPEE EVSGGQKYPL EPISSSHTDD TTVNGGDGDS KNSINVFGGE HGYEDFGFCY
201: DDKFSSFLNS LINDVGDPFG NIIPISQPLQ MDDCKDGIVG ASSSSLGHD
Arabidopsis Description
MYB5MYB5 [Source:UniProtKB/TrEMBL;Acc:A0A178VAR4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.