Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH02634 | Soybean | nucleus | 55.15 | 54.07 |
| KRH19274 | Soybean | nucleus | 53.82 | 53.29 |
| VIT_04s0008g01800.t01 | Wine grape | nucleus | 45.18 | 51.32 |
| VIT_17s0000g02650.t01 | Wine grape | nucleus | 27.57 | 50.3 |
| VIT_13s0084g00530.t01 | Wine grape | nucleus | 43.19 | 49.43 |
| VIT_11s0016g01310.t01 | Wine grape | nucleus | 35.88 | 49.09 |
| VIT_04s0008g01870.t01 | Wine grape | nucleus | 31.56 | 48.22 |
| VIT_09s0002g01380.t01 | Wine grape | nucleus | 30.56 | 45.32 |
| VIT_04s0008g01840.t01 | Wine grape | nucleus | 33.55 | 44.69 |
| VIT_11s0016g01320.t01 | Wine grape | nucleus | 40.86 | 43.31 |
| VIT_04s0008g01820.t01 | Wine grape | nucleus | 42.52 | 43.1 |
| VIT_09s0002g01400.t01 | Wine grape | nucleus | 48.17 | 42.27 |
| VIT_04s0008g01810.t01 | Wine grape | nucleus | 38.54 | 42.03 |
| VIT_04s0023g03710.t01 | Wine grape | nucleus | 31.89 | 39.67 |
| VIT_14s0006g01620.t01 | Wine grape | nucleus | 28.9 | 38.16 |
| VIT_01s0011g04760.t01 | Wine grape | nucleus | 27.91 | 37.33 |
| VIT_17s0000g02660.t01 | Wine grape | nucleus | 28.24 | 37.12 |
| VIT_03s0038g02310.t01 | Wine grape | nucleus | 30.9 | 37.05 |
| VIT_17s0000g08480.t01 | Wine grape | nucleus | 26.25 | 36.57 |
| VIT_14s0066g01220.t01 | Wine grape | nucleus | 26.25 | 36.41 |
| VIT_18s0117g00200.t01 | Wine grape | nucleus | 27.91 | 36.05 |
| GSMUA_Achr7P18550_001 | Banana | nucleus | 30.9 | 35.23 |
| GSMUA_Achr7P18560_001 | Banana | nucleus | 31.23 | 34.94 |
| VIT_04s0008g01830.t01 | Wine grape | nucleus | 32.56 | 34.75 |
| Solyc12g049300.1.1 | Tomato | nucleus | 40.53 | 34.66 |
| VIT_15s0046g00170.t01 | Wine grape | nucleus | 32.89 | 34.62 |
| VIT_11s0016g05660.t01 | Wine grape | nucleus | 25.58 | 34.53 |
| VIT_11s0016g05690.t01 | Wine grape | nucleus | 24.58 | 33.18 |
| VIT_18s0117g00210.t01 | Wine grape | nucleus | 28.24 | 32.95 |
| VIT_01s0127g00730.t01 | Wine grape | nucleus | 23.59 | 32.27 |
| VIT_09s0002g01410.t01 | Wine grape | nucleus | 31.56 | 32.09 |
| VIT_07s0130g00040.t01 | Wine grape | nucleus | 29.9 | 31.03 |
| VIT_06s0004g00570.t01 | Wine grape | nucleus, plastid | 31.23 | 30.13 |
| VIT_08s0007g07230.t01 | Wine grape | nucleus | 31.23 | 29.38 |
| VIT_07s0005g01210.t01 | Wine grape | nucleus | 32.56 | 26.7 |
| GSMUA_Achr6P02530_001 | Banana | nucleus | 31.56 | 26.32 |
| VIT_05s0077g01360.t01 | Wine grape | nucleus | 32.23 | 25.33 |
| PGSC0003DMT400030322 | Potato | nucleus | 3.65 | 6.71 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100254224 | wikigene:100254224 | MapMan:15.5.2.1 | ProteinID:CCB51409 | ProteinID:CCB51409.1 |
| UniProt:F6HGP4 | EMBL:FN595756 | GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 |
| EntrezGene:LOC100254224 | wikigene:LOC100254224 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF459 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI00021081EC | ArrayExpress:VIT_11s0016g01300 |
| EnsemblPlantsGene:VIT_11s0016g01300 | EnsemblPlants:VIT_11s0016g01300.t01 | RefSeq:XP_003633091 | RefSeq:XP_003633091.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr11:-:1044450..1045851
Molecular Weight (calculated)
33442.6 Da
IEP (calculated)
7.643
GRAVY (calculated)
-0.580
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRSPCCSKE GLNRGAWTVV EDKILTEYIK VHGEGRWRNL PKKAGLKRCG KSCRLRWLNY LRPDIKRGNI SHDEEDLIVR LHKLLGNRWS LIAGRLPGRT
101: DNEIKNYWNT NLVKKMQSRQ TPGSSQSADR NKNKAVVEEP SRSKTETNVI RTKATRCSRV FIAPLADRST NENSIPRPRP AEPAGPSMTP DLSMCHLVET
201: GASSLVDTGD FSVDFMADMN MGELCLSDLL NSNFSDLCEV HCENGNELSA SSDGVAPLMF SKEMLEDWSS LGCYPLQPNV GSNLNSFTSF LDSGGDWLGG
301: E
101: DNEIKNYWNT NLVKKMQSRQ TPGSSQSADR NKNKAVVEEP SRSKTETNVI RTKATRCSRV FIAPLADRST NENSIPRPRP AEPAGPSMTP DLSMCHLVET
201: GASSLVDTGD FSVDFMADMN MGELCLSDLL NSNFSDLCEV HCENGNELSA SSDGVAPLMF SKEMLEDWSS LGCYPLQPNV GSNLNSFTSF LDSGGDWLGG
301: E
001: MGKRATTSVR REELNRGAWT DHEDKILRDY ITTHGEGKWS TLPNQAGLKR CGKSCRLRWK NYLRPGIKRG NISSDEEELI IRLHNLLGNR WSLIAGRLPG
101: RTDNEIKNHW NSNLRKRLPK TQTKQPKRIK HSTNNENNVC VIRTKAIRCS KTLLFSDLSL QKKSSTSPLP LKEQEMDQGG SSLMGDLEFD FDRIHSEFHF
201: PDLMDFDGLD CGNVTSLVSS NEILGELVPA QGNLDLNRPF TSCHHRGDDE DWLRDFTC
101: RTDNEIKNHW NSNLRKRLPK TQTKQPKRIK HSTNNENNVC VIRTKAIRCS KTLLFSDLSL QKKSSTSPLP LKEQEMDQGG SSLMGDLEFD FDRIHSEFHF
201: PDLMDFDGLD CGNVTSLVSS NEILGELVPA QGNLDLNRPF TSCHHRGDDE DWLRDFTC
Arabidopsis Description
TT2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT5G35550]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.