Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 5
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_11s0016g01310.t01 | Wine grape | nucleus | 37.71 | 50.91 |
VIT_04s0008g01870.t01 | Wine grape | nucleus | 33.33 | 50.25 |
VIT_17s0000g02650.t01 | Wine grape | nucleus | 27.61 | 49.7 |
VIT_13s0084g00530.t01 | Wine grape | nucleus | 42.76 | 48.29 |
VIT_09s0002g01380.t01 | Wine grape | nucleus | 32.66 | 47.78 |
VIT_04s0008g01800.t01 | Wine grape | nucleus | 42.09 | 47.17 |
VIT_04s0008g01840.t01 | Wine grape | nucleus | 34.34 | 45.13 |
VIT_11s0016g01300.t01 | Wine grape | nucleus | 43.1 | 42.52 |
VIT_11s0016g01320.t01 | Wine grape | nucleus | 40.07 | 41.9 |
VIT_04s0008g01810.t01 | Wine grape | nucleus | 36.7 | 39.49 |
VIT_01s0011g04760.t01 | Wine grape | nucleus | 29.29 | 38.67 |
VIT_09s0002g01400.t01 | Wine grape | nucleus | 43.77 | 37.9 |
VIT_14s0006g01620.t01 | Wine grape | nucleus | 28.96 | 37.72 |
VIT_11s0016g05660.t01 | Wine grape | nucleus | 28.28 | 37.67 |
VIT_17s0000g08480.t01 | Wine grape | nucleus | 26.6 | 36.57 |
VIT_04s0023g03710.t01 | Wine grape | nucleus | 29.63 | 36.36 |
GSMUA_Achr7P18550_001 | Banana | nucleus | 31.99 | 35.98 |
VIT_14s0066g01220.t01 | Wine grape | nucleus | 26.26 | 35.94 |
VIT_04s0008g01830.t01 | Wine grape | nucleus | 34.01 | 35.82 |
GSMUA_Achr7P18560_001 | Banana | nucleus | 32.32 | 35.69 |
VIT_18s0117g00200.t01 | Wine grape | nucleus | 27.95 | 35.62 |
VIT_03s0038g02310.t01 | Wine grape | nucleus | 29.63 | 35.06 |
VIT_11s0016g05690.t01 | Wine grape | nucleus | 26.26 | 34.98 |
VIT_17s0000g02660.t01 | Wine grape | nucleus | 26.94 | 34.93 |
Solyc12g049300.1.1 | Tomato | nucleus | 41.08 | 34.66 |
VIT_15s0046g00170.t01 | Wine grape | nucleus | 33.33 | 34.62 |
VIT_01s0127g00730.t01 | Wine grape | nucleus | 24.92 | 33.64 |
VIT_18s0117g00210.t01 | Wine grape | nucleus | 27.95 | 32.17 |
VIT_09s0002g01410.t01 | Wine grape | nucleus | 30.3 | 30.41 |
VIT_07s0130g00040.t01 | Wine grape | nucleus | 28.62 | 29.31 |
VIT_06s0004g00570.t01 | Wine grape | nucleus, plastid | 29.29 | 27.88 |
VIT_08s0007g07230.t01 | Wine grape | nucleus | 28.96 | 26.88 |
GSMUA_Achr6P02530_001 | Banana | nucleus | 31.31 | 25.76 |
VIT_07s0005g01210.t01 | Wine grape | nucleus | 29.63 | 23.98 |
VIT_05s0077g01360.t01 | Wine grape | nucleus | 29.63 | 22.98 |
PGSC0003DMT400030322 | Potato | nucleus | 3.03 | 5.49 |
Protein Annotations
Gene3D:1.10.10.60 | EntrezGene:100244051 | wikigene:100244051 | MapMan:15.5.2.1 | ProteinID:CCB46604 | ProteinID:CCB46604.1 |
UniProt:F6H3S1 | EMBL:FN595231 | GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 |
EntrezGene:LOC100244051 | wikigene:LOC100244051 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
PANTHER:PTHR10641:SF459 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0002109A77 | ArrayExpress:VIT_04s0008g01820 |
EnsemblPlantsGene:VIT_04s0008g01820 | EnsemblPlants:VIT_04s0008g01820.t01 | RefSeq:XP_002279900 | RefSeq:XP_002279900.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr4:+:1456404..1464354
Molecular Weight (calculated)
33833.1 Da
IEP (calculated)
8.784
GRAVY (calculated)
-0.780
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRAPCCSKE GLNRGAWTAL EDKILSDYIK VHGEGKWRNI PKQAGLKRCG KSCRLRWLNY LRPDIKRGNI SLEEEDLIIR LHKLLGNRWA LIAGRLPGRT
101: DNEIKNYWNT TLRKKVNGKQ PNHESKDEKK KSSIKESIEK NPPPSTMVES QVIRTKASRC NKVFISQPQK LQNLDNGVAA KEDSMNCRPK AIPSNTSGED
201: DSFNGTMDFD VGEFFMSDIS DSDLWKLFQF DNNSNTVKED GNNNDGFPFS SADQPGLFSE EMIKDWIRDD EILRIIYLGL FTSLNKDGLI IQPNFKS
101: DNEIKNYWNT TLRKKVNGKQ PNHESKDEKK KSSIKESIEK NPPPSTMVES QVIRTKASRC NKVFISQPQK LQNLDNGVAA KEDSMNCRPK AIPSNTSGED
201: DSFNGTMDFD VGEFFMSDIS DSDLWKLFQF DNNSNTVKED GNNNDGFPFS SADQPGLFSE EMIKDWIRDD EILRIIYLGL FTSLNKDGLI IQPNFKS
001: MGKRATTSVR REELNRGAWT DHEDKILRDY ITTHGEGKWS TLPNQAGLKR CGKSCRLRWK NYLRPGIKRG NISSDEEELI IRLHNLLGNR WSLIAGRLPG
101: RTDNEIKNHW NSNLRKRLPK TQTKQPKRIK HSTNNENNVC VIRTKAIRCS KTLLFSDLSL QKKSSTSPLP LKEQEMDQGG SSLMGDLEFD FDRIHSEFHF
201: PDLMDFDGLD CGNVTSLVSS NEILGELVPA QGNLDLNRPF TSCHHRGDDE DWLRDFTC
101: RTDNEIKNHW NSNLRKRLPK TQTKQPKRIK HSTNNENNVC VIRTKAIRCS KTLLFSDLSL QKKSSTSPLP LKEQEMDQGG SSLMGDLEFD FDRIHSEFHF
201: PDLMDFDGLD CGNVTSLVSS NEILGELVPA QGNLDLNRPF TSCHHRGDDE DWLRDFTC
Arabidopsis Description
TT2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT5G35550]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.