Factsheet for VIT_04s0023g03710.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0104g00090.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38620.1	VIT_07s0104g00090.t01	AT4G09820.1	15361138

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0038g02310.t01	Wine grape	nucleus	74.79	72.11
Solyc01g111500.2.1	Tomato	nucleus	69.42	66.67
PGSC0003DMT400015803	Potato	nucleus	69.01	65.75
PGSC0003DMT400034372	Potato	nucleus	69.83	63.06
Solyc10g055410.1.1	Tomato	nucleus	70.66	62.64
VIT_17s0000g02650.t01	Wine grape	nucleus	39.67	58.18
AT4G38620.1	Thale cress	nucleus	65.7	56.38
Bra010736.1-P	Field mustard	nucleus	65.29	55.83
CDX90285	Canola	nucleus	65.29	55.83
CDY22416	Canola	nucleus	66.94	55.1
CDX72743	Canola	nucleus	66.94	55.1
Bra033572.1-P	Field mustard	nucleus	66.94	55.1
CDY52797	Canola	nucleus	56.2	52.71
CDY12092	Canola	nucleus	65.29	51.97
VIT_14s0006g01620.t01	Wine grape	nucleus	46.28	49.12
VIT_18s0117g00200.t01	Wine grape	nucleus	46.69	48.5
VIT_01s0011g04760.t01	Wine grape	nucleus	45.04	48.44
VIT_07s0130g00040.t01	Wine grape	nucleus	57.85	48.28
VIT_18s0117g00210.t01	Wine grape	nucleus	50.83	47.67
VIT_17s0000g02660.t01	Wine grape	nucleus	41.74	44.1
VIT_04s0008g01870.t01	Wine grape	nucleus	33.06	40.61
VIT_09s0002g01380.t01	Wine grape	nucleus	32.23	38.42
VIT_15s0046g00170.t01	Wine grape	nucleus	44.63	37.76
VIT_11s0016g01310.t01	Wine grape	nucleus	33.88	37.27
VIT_14s0066g01220.t01	Wine grape	nucleus	31.82	35.48
VIT_04s0008g01800.t01	Wine grape	nucleus	38.84	35.47
VIT_11s0016g05660.t01	Wine grape	nucleus	31.82	34.53
VIT_17s0000g08480.t01	Wine grape	nucleus	30.58	34.26
VIT_11s0016g05690.t01	Wine grape	nucleus	30.17	32.74
VIT_01s0127g00730.t01	Wine grape	nucleus	29.75	32.73
VIT_13s0084g00530.t01	Wine grape	nucleus	34.71	31.94
VIT_11s0016g01300.t01	Wine grape	nucleus	39.67	31.89
VIT_04s0008g01840.t01	Wine grape	nucleus	29.75	31.86
VIT_04s0008g01810.t01	Wine grape	nucleus	35.95	31.52
VIT_09s0002g01410.t01	Wine grape	nucleus	36.78	30.07
VIT_06s0004g00570.t01	Wine grape	nucleus, plastid	38.43	29.81
VIT_04s0008g01820.t01	Wine grape	nucleus	36.36	29.63
VIT_11s0016g01320.t01	Wine grape	nucleus	34.71	29.58
VIT_09s0002g01400.t01	Wine grape	nucleus	41.32	29.15
VIT_04s0008g01830.t01	Wine grape	nucleus	33.88	29.08
VIT_08s0007g07230.t01	Wine grape	nucleus	38.02	28.75
VIT_05s0077g01360.t01	Wine grape	nucleus	43.39	27.42
VIT_07s0005g01210.t01	Wine grape	nucleus	40.08	26.43

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100245558	wikigene:100245558	MapMan:15.5.2.1	ProteinID:ACN94269	ProteinID:ACN94269.1
ProteinID:CBI17347	ProteinID:CBI17347.3	UniProt:D7SNW8	EMBL:FJ792820	EMBL:FN594959	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:MYB4B	wikigene:MYB4B	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF741	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI00015CC372	ArrayExpress:VIT_04s0023g03710	EnsemblPlantsGene:VIT_04s0023g03710	EnsemblPlants:VIT_04s0023g03710.t01	unigene:Vvi.20893
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:20251981..20252945

Molecular Weight (calculated)

27286.5 Da

IEP (calculated)

8.219

GRAVY (calculated)

-0.691

Length

242 amino acids

Sequence
(BLAST)

001: MGRSPCCEKA HTNKGAWTKE EDDRLIAHIQ AHGEGCWRSL PKAAGLLRCG KSCRLRWINY LRPDLKRGNF TDEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIRRKLLSRG IDPLTHRPIN EAAVDVATVS FGGVLKKEEV MSSGFGCKSR NPDEENCPDL NLELRISPPH HHPSPPVLDS RERRMLCFYC
201: SLGLEKSKEC SCSSGSGNGS SDDFLGMNNG VLDYRNLEMK RD

Best Arabidopsis Sequence Match ( AT4G38620.1 )
(BLAST)

001: MGRSPCCEKA HTNKGAWTKE EDERLVAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIRRKLINRG IDPTSHRPIQ ESSASQDSKP TQLEPVTSNT INISFTSAPK VETFHESISF PGKSEKISML TFKEEKDECP VQEKFPDLNL
201: ELRISLPDDV DRLQGHGKST TPRCFKCSLG MINGMECRCG RMRCDVVGGS SKGSDMSNGF DFLGLAKKET TSLLGFRSLE MK

Arabidopsis Description

MYB4Transcription repressor MYB4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZP1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.