Factsheet for Solyc10g055410.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc09g065100.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38620.1	Solyc09g065100.1.1	AT4G09820.1	15361138

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034372	Potato	nucleus	95.97	97.76
GSMUA_Achr11P...	Banana	nucleus	47.62	77.84
KRH60702	Soybean	nucleus	59.71	77.62
GSMUA_Achr9P24180_001	Banana	nucleus	49.08	77.46
GSMUA_Achr8P33900_001	Banana	nucleus	56.41	75.86
Solyc01g111500.2.1	Tomato	nucleus	68.5	74.21
Zm00001d022628_P001	Maize	nucleus	58.97	73.85
GSMUA_Achr1P02420_001	Banana	nucleus	52.75	73.85
KRH51400	Soybean	nucleus	62.64	72.77
VIT_04s0023g03710.t01	Wine grape	nucleus	62.64	70.66
KRH29280	Soybean	nucleus	63.37	70.33
KRH24301	Soybean	nucleus	64.84	69.96
Solyc12g096200.1.1	Tomato	nucleus	30.77	67.2
GSMUA_Achr1P26520_001	Banana	nucleus	58.97	66.81
GSMUA_Achr1P07550_001	Banana	nucleus	57.51	66.24
Os09t0538400-01	Rice	extracellular	60.81	66.14
TraesCS7B01G169900.1	Wheat	nucleus	54.95	63.83
TraesCS7D01G272400.1	Wheat	nucleus	54.21	63.25
EES14116	Sorghum	nucleus	59.71	63.18
EER99264	Sorghum	nucleus	60.81	62.88
HORVU7Hr1G057410.1	Barley	nucleus	54.58	62.6
TraesCS7A01G272100.1	Wheat	nucleus	54.21	61.67
TraesCS5B01G330100.1	Wheat	nucleus	59.34	61.6
Zm00001d032024_P001	Maize	nucleus	57.14	61.42
TraesCS5D01G335700.1	Wheat	nucleus	58.97	60.53
TraesCS5A01G329900.1	Wheat	nucleus	58.61	59.7
HORVU5Hr1G083910.2	Barley	nucleus	58.61	59.48
Zm00001d053220_P001	Maize	nucleus	56.04	58.85
Zm00001d006236_P002	Maize	nucleus	58.61	58.61
AT4G38620.1	Thale cress	nucleus	60.44	58.51
Bra010736.1-P	Field mustard	nucleus	59.34	57.24
CDX90285	Canola	nucleus	59.34	57.24
GSMUA_Achr4P25710_001	Banana	nucleus	39.93	56.77
Solyc05g008250.1.1	Tomato	nucleus	36.63	56.18
CDX72743	Canola	nucleus	60.44	56.12
Bra033572.1-P	Field mustard	nucleus	60.07	55.78
CDY22416	Canola	nucleus	60.07	55.78
CDY52797	Canola	nucleus	50.55	53.49
CDY12092	Canola	nucleus	58.97	52.96
Solyc06g065100.2.1	Tomato	nucleus	53.48	52.33
Solyc08g082890.2.1	Tomato	nucleus	37.36	36.04
Solyc07g008010.2.1	Tomato	nucleus	26.37	34.12
Solyc08g005870.1.1	Tomato	nucleus	34.07	32.86
Solyc01g005660.1.1	Tomato	nucleus, plastid	34.8	30.84
Solyc06g009710.2.1	Tomato	nucleus	33.33	30.64
Solyc08g008480.2.1	Tomato	nucleus	35.16	30.09
Solyc12g049350.1.1	Tomato	nucleus	32.23	30.03
Solyc12g049300.1.1	Tomato	nucleus	34.43	26.7
Solyc01g079620.2.1	Tomato	nucleus	31.5	25.44

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF741	UniProt:Q43525
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc10g055410.1	EnsemblPlants:Solyc10g055410.1.1	UniParc:UPI000009FD7C
EMBL:X95296	SEG:seg	:	:	:	:

Description

Transcription factor [Source:UniProtKB/TrEMBL;Acc:Q43525]

Coordinates

chr10:-:56717892..56718863

Molecular Weight (calculated)

31101.8 Da

IEP (calculated)

7.945

GRAVY (calculated)

-0.730

Length

273 amino acids

Sequence
(BLAST)

001: MGRSPCCEKA HTNKGAWTKE EDERLISYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIRRKLLSRG IDPTTHRSIN DPTTIPKVTT ITFAAAHENI KDIDQQDEMI NIKAEFVETS KESDNNEIIQ EKSSSCLPDL NLELRISPPH
201: HQQLDHHRHH QRSSSLCFTC SLGIQNSKDC SCGSESNGNG WSNNMVSMNI MAGYDFLGLK TNGLLDYRTL ETK

Best Arabidopsis Sequence Match ( AT4G38620.1 )
(BLAST)

001: MGRSPCCEKA HTNKGAWTKE EDERLVAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIRRKLINRG IDPTSHRPIQ ESSASQDSKP TQLEPVTSNT INISFTSAPK VETFHESISF PGKSEKISML TFKEEKDECP VQEKFPDLNL
201: ELRISLPDDV DRLQGHGKST TPRCFKCSLG MINGMECRCG RMRCDVVGGS SKGSDMSNGF DFLGLAKKET TSLLGFRSLE MK

Arabidopsis Description

MYB4Transcription repressor MYB4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZP1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.