Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d019170_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G38620.1 | Zm00001d019170_P001 | AT4G09820.1 | 15361138 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES14116 | Sorghum | nucleus | 81.15 | 81.78 |
| Zm00001d032024_P001 | Maize | nucleus | 79.23 | 81.1 |
| Zm00001d022628_P001 | Maize | nucleus | 63.08 | 75.23 |
| TraesCS7A01G272100.1 | Wheat | nucleus | 66.92 | 72.5 |
| HORVU7Hr1G057410.1 | Barley | nucleus | 66.15 | 72.27 |
| TraesCS7D01G272400.1 | Wheat | nucleus | 65.0 | 72.22 |
| TraesCS7B01G169900.1 | Wheat | nucleus | 65.0 | 71.91 |
| KRH60702 | Soybean | nucleus | 56.92 | 70.48 |
| GSMUA_Achr1P02420_001 | Banana | nucleus | 51.54 | 68.72 |
| Zm00001d006236_P002 | Maize | nucleus | 66.15 | 63.0 |
| VIT_03s0038g02310.t01 | Wine grape | nucleus | 60.0 | 62.15 |
| KRH51400 | Soybean | nucleus | 56.15 | 62.13 |
| KRH29280 | Soybean | nucleus | 56.54 | 59.76 |
| Solyc01g111500.2.1 | Tomato | nucleus | 57.69 | 59.52 |
| PGSC0003DMT400015803 | Potato | nucleus | 58.08 | 59.45 |
| KRH24301 | Soybean | nucleus | 56.54 | 58.1 |
| Solyc10g055410.1.1 | Tomato | nucleus | 58.85 | 56.04 |
| GSMUA_Achr4P25710_001 | Banana | nucleus | 41.15 | 55.73 |
| PGSC0003DMT400034372 | Potato | nucleus | 56.92 | 55.22 |
| Zm00001d038338_P001 | Maize | nucleus | 54.23 | 54.65 |
| Zm00001d012255_P001 | Maize | nucleus | 51.92 | 53.78 |
| Zm00001d041853_P001 | Maize | nucleus | 45.77 | 52.65 |
| Zm00001d010201_P001 | Maize | nucleus | 50.38 | 52.61 |
| Zm00001d042665_P001 | Maize | nucleus | 52.69 | 52.29 |
| Bra010736.1-P | Field mustard | nucleus | 56.54 | 51.94 |
| CDX90285 | Canola | nucleus | 56.54 | 51.94 |
| AT4G38620.1 | Thale cress | nucleus | 56.15 | 51.77 |
| CDY22416 | Canola | nucleus | 55.38 | 48.98 |
| CDX72743 | Canola | nucleus | 55.38 | 48.98 |
| Bra033572.1-P | Field mustard | nucleus | 55.38 | 48.98 |
| CDY52797 | Canola | nucleus | 48.08 | 48.45 |
| CDY12092 | Canola | nucleus | 56.15 | 48.03 |
| Zm00001d004744_P001 | Maize | nucleus | 49.23 | 46.55 |
| Zm00001d053060_P001 | Maize | nucleus | 51.15 | 46.18 |
| Zm00001d011645_P001 | Maize | nucleus | 33.85 | 38.26 |
| Zm00001d037118_P001 | Maize | nucleus | 35.0 | 33.33 |
| Zm00001d044975_P001 | Maize | nucleus | 33.85 | 32.35 |
| Zm00001d028842_P001 | Maize | nucleus | 34.23 | 26.57 |
| Zm00001d047671_P001 | Maize | nucleus | 33.08 | 25.0 |
| Zm00001d040621_P002 | Maize | nucleus | 33.85 | 24.86 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100101513 | MapMan:15.5.2.1 | ProteinID:AQK58964.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:K7UPS5 | InterPro:Myb_dom |
| PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF741 | InterPro:SANT/Myb | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI0001B347D1 | EnsemblPlantsGene:Zm00001d053220 | EnsemblPlants:Zm00001d053220_P001 | EnsemblPlants:Zm00001d053220_T001 | SEG:seg |
Description
myb transcription factor 42 myb transcription factor 42
Coordinates
chr4:-:220717445..220718702
Molecular Weight (calculated)
28256.7 Da
IEP (calculated)
8.033
GRAVY (calculated)
-0.447
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRSPCCEKA HTNRGAWTKE EDERLVAYVR AHGEGCWRSL PRAAGLLRCG KSCRLRWINY LRPDLKRGNF TADEDDLIVK LHSLLGNKWS LIAARLPGRT
101: DNEIKNYWNT HIRRKLLGSG IDPVTHRRVA GGAATTISFQ PSPNTAVAAA AETAAQAPIK AEETAAVKAP RCPDLNLDLC ISPPCQHEDD GEEEEEELDL
201: IKPAVVKREA LQAGHGHGHG LCLGCGLGGQ KGAAGCSCSN GHHFLGLRTS VLDFRGLEMK
101: DNEIKNYWNT HIRRKLLGSG IDPVTHRRVA GGAATTISFQ PSPNTAVAAA AETAAQAPIK AEETAAVKAP RCPDLNLDLC ISPPCQHEDD GEEEEEELDL
201: IKPAVVKREA LQAGHGHGHG LCLGCGLGGQ KGAAGCSCSN GHHFLGLRTS VLDFRGLEMK
001: MGRSPCCEKE HMNKGAWTKE EDERLVSYIK SHGEGCWRSL PRAAGLLRCG KSCRLRWINY LRPDLKRGNF THDEDELIIK LHSLLGNKWS LIAARLPGRT
101: DNEIKNYWNT HIKRKLLSKG IDPATHRGIN EAKISDLKKT KDQIVKDVSF VTKFEETDKS GDQKQNKYIR NGLVCKEERV VVEEKIGPDL NLELRISPPW
201: QNQREISTCT ASRFYMENDM ECSSETVKCQ TENSSSISYS SIDISSSNVG YDFLGLKTRI LDFRSLEMK
101: DNEIKNYWNT HIKRKLLSKG IDPATHRGIN EAKISDLKKT KDQIVKDVSF VTKFEETDKS GDQKQNKYIR NGLVCKEERV VVEEKIGPDL NLELRISPPW
201: QNQREISTCT ASRFYMENDM ECSSETVKCQ TENSSSISYS SIDISSSNVG YDFLGLKTRI LDFRSLEMK
Arabidopsis Description
MYB7Transcription factor MYB7 [Source:UniProtKB/Swiss-Prot;Acc:Q42379]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.