Factsheet for Zm00001d047671_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028842_P001	Maize	nucleus	77.03	79.1
KRG94424	Soybean	nucleus	19.48	72.83
EER92385	Sorghum	nucleus	70.35	67.98
TraesCS4A01G118400.1	Wheat	nucleus	60.47	60.12
TraesCS4D01G187100.1	Wheat	nucleus	59.88	59.54
TraesCS4B01G186000.1	Wheat	nucleus	59.59	59.25
HORVU4Hr1G054420.3	Barley	nucleus	58.43	59.12
TraesCS1D01G021700.1	Wheat	nucleus	47.67	52.23
TraesCS1B01G023400.1	Wheat	nucleus	47.38	50.78
TraesCS1B01G023500.1	Wheat	nucleus	46.22	49.53
TraesCS1B01G049700.1	Wheat	nucleus	45.64	48.91
TraesCS1B01G005200.1	Wheat	nucleus	47.09	48.8
TraesCS1A01G021500.1	Wheat	nucleus	46.8	47.77
TraesCS1D01G020900.1	Wheat	nucleus	45.93	46.61
GSMUA_AchrUn_...	Banana	nucleus	38.37	41.25
Zm00001d041853_P001	Maize	nucleus	26.74	40.71
Zm00001d022628_P001	Maize	nucleus	25.58	40.37
GSMUA_Achr8P10470_001	Banana	nucleus	42.15	39.08
Solyc06g009710.2.1	Tomato	nucleus	33.14	38.38
PGSC0003DMT400011167	Potato	nucleus	29.65	37.78
PGSC0003DMT400018841	Potato	nucleus	33.14	37.62
Zm00001d012255_P001	Maize	nucleus	26.74	36.65
Zm00001d040621_P002	Maize	nucleus	37.5	36.44
Zm00001d032024_P001	Maize	nucleus	26.74	36.22
KRH31822	Soybean	nucleus	35.76	35.96
AT3G62610.1	Thale cress	nucleus	35.76	35.86
Solyc12g049350.1.1	Tomato	nucleus	30.52	35.84
Zm00001d042665_P001	Maize	nucleus	27.03	35.5
Zm00001d010201_P001	Maize	nucleus	25.29	34.94
Zm00001d011645_P001	Maize	nucleus	23.26	34.78
VIT_07s0005g01210.t01	Wine grape	nucleus	36.92	34.6
Zm00001d038338_P001	Maize	nucleus	25.87	34.5
GSMUA_Achr5P21250_001	Banana	nucleus	31.98	34.27
Solyc01g079620.2.1	Tomato	nucleus	32.85	33.43
Zm00001d006236_P002	Maize	nucleus	26.45	33.33
AT2G47460.1	Thale cress	nucleus	35.76	33.15
Zm00001d053220_P001	Maize	nucleus	25.0	33.08
KRG96503	Soybean	nucleus	34.01	33.05
KRH50769	Soybean	nucleus	32.27	32.94
KRH69237	Soybean	nucleus	35.47	32.88
Zm00001d004744_P001	Maize	nucleus	26.16	32.73
Bra037419.1-P	Field mustard	nucleus	32.56	32.65
KRH37017	Soybean	nucleus	31.69	32.63
KRH02323	Soybean	nucleus	33.14	32.57
AT5G49330.1	Thale cress	nucleus	32.27	32.46
KRH68241	Soybean	nucleus	33.72	32.31
Zm00001d037118_P001	Maize	nucleus	25.58	32.23
KRH11988	Soybean	nucleus	30.81	32.12
Zm00001d044975_P001	Maize	nucleus	25.29	31.99
PGSC0003DMT400023322	Potato	nucleus	33.72	31.96
Bra036145.1-P	Field mustard	nucleus	31.98	31.7
Zm00001d053060_P001	Maize	nucleus	26.16	31.25
Bra000453.1-P	Field mustard	nucleus	33.72	30.85
Bra004456.1-P	Field mustard	nucleus	31.1	29.32
VIT_05s0077g01360.t01	Wine grape	nucleus	31.4	28.2
CDY27486	Canola	plastid	6.69	9.75

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100282078	MapMan:15.5.2.1	ProteinID:AQL07241.1	UniProt:B4FQU7	EMBL:BT039485
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	EMBL:HQ858664	InterPro:Homeobox-like_sf
InterPro:IPR017930	InterPro:Myb-rel_proteinP_C	InterPro:Myb_dom	PFAM:PF00249	PFAM:PF06640	PFscan:PS51294
PANTHER:PTHR10641	PANTHER:PTHR10641:SF203	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00017B77A4
EnsemblPlantsGene:Zm00001d047671	EnsemblPlants:Zm00001d047671_P001	EnsemblPlants:Zm00001d047671_T001	SEG:seg	:	:

Description

MYB-transcription factor 154Transcription factor MYB12

Coordinates

chr9:+:138752709..138756941

Molecular Weight (calculated)

37312.7 Da

IEP (calculated)

4.624

GRAVY (calculated)

-0.775

Length

344 amino acids

Sequence
(BLAST)

001: MGRAPCCEKV GLKRGRWTKE EDQILANYIA EHGEGSWRSL PKNAGLLRCG KSCRLRWINY LRADVKRGNI SKEEEDVIIK LHATLGNRWS LIASHLPGRT
101: DNEIKNYWNS HLSRQIHTYR RKYTAGPDTA PIAIAIAIDM SKLHSAERRR GGRTPGRSPK SATSSSSMTK SKQPDDPEPE PEAGGASSPR HSDGARSAVV
201: DPDPDPNQPN SSSGSGSTGE GEDATGPWVL DPIELGDLWE AESEMDALMS IGGAAHDSAT AEGFDAAQAQ VDDLFDDMDW DNFAAHLWGE PEQQNDHSAQ
301: PQPQQAAEPQ AAAAADVAAA GAEACDPDEH ELEALETWLL SDSF

Best Arabidopsis Sequence Match ( AT2G47460.1 )
(BLAST)

001: MGRAPCCEKV GIKRGRWTAE EDQILSNYIQ SNGEGSWRSL PKNAGLKRCG KSCRLRWINY LRSDLKRGNI TPEEEELVVK LHSTLGNRWS LIAGHLPGRT
101: DNEIKNYWNS HLSRKLHNFI RKPSISQDVS AVIMTNASSA PPPPQAKRRL GRTSRSAMKP KIHRTKTRKT KKTSAPPEPN ADVAGADKEA LMVESSGAEA
201: ELGRPCDYYG DDCNKNLMSI NGDNGVLTFD DDIIDLLLDE SDPGHLYTNT TCGGDGELHN IRDSEGARGF SDTWNQGNLD CLLQSCPSVE SFLNYDHQVN
301: DASTDEFIDW DCVWQEGSDN NLWHEKENPD SMVSWLLDGD DEATIGNSNC ENFGEPLDHD DESALVAWLL S

Arabidopsis Description

MYB12Transcription factor MYB12 [Source:UniProtKB/Swiss-Prot;Acc:O22264]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.