Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G021700.1 | Wheat | nucleus | 74.1 | 78.34 |
| TraesCS1B01G049700.1 | Wheat | nucleus | 67.77 | 70.09 |
| TraesCS1B01G023400.1 | Wheat | nucleus | 67.77 | 70.09 |
| TraesCS1B01G023500.1 | Wheat | nucleus | 65.36 | 67.6 |
| KRG94424 | Soybean | nucleus | 18.37 | 66.3 |
| TraesCS4B01G186000.1 | Wheat | nucleus | 68.67 | 65.9 |
| Zm00001d028842_P001 | Maize | nucleus | 50.3 | 49.85 |
| EER92385 | Sorghum | nucleus | 50.9 | 47.47 |
| Zm00001d047671_P001 | Maize | nucleus | 48.8 | 47.09 |
| TraesCS3B01G515900.1 | Wheat | nucleus | 25.0 | 40.69 |
| GSMUA_AchrUn_... | Banana | nucleus | 34.94 | 36.25 |
| TraesCS7B01G169900.1 | Wheat | nucleus | 25.6 | 36.17 |
| VIT_07s0005g01210.t01 | Wine grape | nucleus | 39.16 | 35.42 |
| Solyc06g009710.2.1 | Tomato | nucleus | 31.63 | 35.35 |
| GSMUA_Achr8P10470_001 | Banana | nucleus | 39.46 | 35.31 |
| AT3G62610.1 | Thale cress | nucleus | 35.54 | 34.4 |
| TraesCS1B01G279400.1 | Wheat | nucleus | 25.3 | 34.01 |
| KRH31822 | Soybean | nucleus | 34.94 | 33.92 |
| TraesCS4B01G323300.1 | Wheat | nucleus | 25.0 | 33.88 |
| TraesCS7B01G070400.1 | Wheat | nucleus | 25.9 | 33.86 |
| TraesCS5B01G330100.1 | Wheat | nucleus | 26.81 | 33.84 |
| PGSC0003DMT400011167 | Potato | nucleus | 27.41 | 33.7 |
| PGSC0003DMT400018841 | Potato | nucleus | 30.42 | 33.33 |
| GSMUA_Achr5P21250_001 | Banana | nucleus | 31.63 | 32.71 |
| Solyc12g049350.1.1 | Tomato | nucleus | 28.61 | 32.42 |
| Bra037419.1-P | Field mustard | nucleus | 33.43 | 32.36 |
| KRH69237 | Soybean | nucleus | 36.14 | 32.34 |
| TraesCS3B01G416400.1 | Wheat | nucleus | 25.9 | 32.21 |
| KRH11988 | Soybean | nucleus | 31.93 | 32.12 |
| KRH37017 | Soybean | nucleus | 32.23 | 32.04 |
| Bra036145.1-P | Field mustard | nucleus | 33.43 | 31.99 |
| KRG96503 | Soybean | nucleus | 34.04 | 31.92 |
| Bra000453.1-P | Field mustard | nucleus | 35.84 | 31.65 |
| AT5G49330.1 | Thale cress | nucleus | 32.53 | 31.58 |
| AT2G47460.1 | Thale cress | nucleus | 35.24 | 31.54 |
| KRH68241 | Soybean | nucleus | 33.73 | 31.2 |
| Solyc01g079620.2.1 | Tomato | nucleus | 31.63 | 31.07 |
| TraesCS5B01G119300.1 | Wheat | nucleus | 25.3 | 30.88 |
| KRH50769 | Soybean | nucleus | 31.33 | 30.86 |
| PGSC0003DMT400023322 | Potato | nucleus | 32.83 | 30.03 |
| VIT_05s0077g01360.t01 | Wine grape | nucleus | 34.34 | 29.77 |
| KRH02323 | Soybean | nucleus | 31.02 | 29.43 |
| TraesCS3B01G290600.1 | Wheat | nucleus | 23.19 | 28.31 |
| Bra004456.1-P | Field mustard | nucleus | 30.72 | 27.95 |
| TraesCS4B01G096500.1 | Wheat | nucleus, plastid | 25.3 | 22.05 |
| CDY27486 | Canola | plastid | 9.04 | 12.71 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G005200.1 | EnsemblPlantsGene:TraesCS1B01G005200 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb-rel_proteinP_C | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF203 | PFAM:PF00249 | PFAM:PF06640 | PFscan:PS51294 | SMART:SM00717 |
| SUPFAM:SSF46689 | TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : |
Description
No Description!
Coordinates
chr1B:+:3200087..3213520
Molecular Weight (calculated)
36721.3 Da
IEP (calculated)
6.984
GRAVY (calculated)
-0.615
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRAPCCEKV GLKRGKWTAK EDDTLAKYIA GHGEGSWRSL PKNAASHCIN TAGLLRCGNS CRLRWVNYLR DGVRRGNFSK EEDDLIVKLH ATLGNRWSLI
101: ASHLPGRTDN EIKNYWNAHL SRQIHSFRRM YTAGKETTIT IDMNKLSTAS KRRGGRAPRS STKKQPVLEP TRSMECSRPV GDMSSSTSSL PQGNSETMLE
201: QNRPINIITN DTPCSEEPMV MDPIDLNGGF LEPSYVYNSM DQIGILQESG EIGALLSSIN DMPARVLTGI EHGGHSPRVE DLLDMDWEGF ASHLCDQPAQ
301: NDPLQTAKPQ ATTGSESDKL ESFVSWLLSD AS
101: ASHLPGRTDN EIKNYWNAHL SRQIHSFRRM YTAGKETTIT IDMNKLSTAS KRRGGRAPRS STKKQPVLEP TRSMECSRPV GDMSSSTSSL PQGNSETMLE
201: QNRPINIITN DTPCSEEPMV MDPIDLNGGF LEPSYVYNSM DQIGILQESG EIGALLSSIN DMPARVLTGI EHGGHSPRVE DLLDMDWEGF ASHLCDQPAQ
301: NDPLQTAKPQ ATTGSESDKL ESFVSWLLSD AS
001: MGRAPCCEKV GIKRGRWTAE EDQILSNYIQ SNGEGSWRSL PKNAGLKRCG KSCRLRWINY LRSDLKRGNI TPEEEELVVK LHSTLGNRWS LIAGHLPGRT
101: DNEIKNYWNS HLSRKLHNFI RKPSISQDVS AVIMTNASSA PPPPQAKRRL GRTSRSAMKP KIHRTKTRKT KKTSAPPEPN ADVAGADKEA LMVESSGAEA
201: ELGRPCDYYG DDCNKNLMSI NGDNGVLTFD DDIIDLLLDE SDPGHLYTNT TCGGDGELHN IRDSEGARGF SDTWNQGNLD CLLQSCPSVE SFLNYDHQVN
301: DASTDEFIDW DCVWQEGSDN NLWHEKENPD SMVSWLLDGD DEATIGNSNC ENFGEPLDHD DESALVAWLL S
101: DNEIKNYWNS HLSRKLHNFI RKPSISQDVS AVIMTNASSA PPPPQAKRRL GRTSRSAMKP KIHRTKTRKT KKTSAPPEPN ADVAGADKEA LMVESSGAEA
201: ELGRPCDYYG DDCNKNLMSI NGDNGVLTFD DDIIDLLLDE SDPGHLYTNT TCGGDGELHN IRDSEGARGF SDTWNQGNLD CLLQSCPSVE SFLNYDHQVN
301: DASTDEFIDW DCVWQEGSDN NLWHEKENPD SMVSWLLDGD DEATIGNSNC ENFGEPLDHD DESALVAWLL S
Arabidopsis Description
MYB12Transcription factor MYB12 [Source:UniProtKB/Swiss-Prot;Acc:O22264]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.