Factsheet for Solyc01g079620.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023322	Potato	nucleus	89.64	83.47
KRG94424	Soybean	nucleus	18.93	69.57
Solyc12g096200.1.1	Tomato	nucleus	23.37	63.2
Solyc06g009710.2.1	Tomato	nucleus	47.34	53.87
Solyc12g049350.1.1	Tomato	nucleus	45.56	52.56
Solyc05g008250.1.1	Tomato	nucleus	23.37	44.38
GSMUA_AchrUn_...	Banana	nucleus	38.46	40.62
KRH31822	Soybean	nucleus	38.76	38.3
CDY05636	Canola	nucleus	32.25	37.59
KRH69237	Soybean	nucleus	40.83	37.2
KRH68241	Soybean	nucleus	38.76	36.49
KRG96503	Soybean	nucleus	38.17	36.44
AT5G49330.1	Thale cress	nucleus	36.69	36.26
VIT_07s0005g01210.t01	Wine grape	nucleus	39.35	36.24
CDY00035	Canola	nucleus	35.21	36.06
CDX85403	Canola	nucleus	36.39	35.96
CDX86237	Canola	nucleus	36.39	35.86
Bra037419.1-P	Field mustard	nucleus	36.39	35.86
Bra036145.1-P	Field mustard	nucleus	35.8	34.87
HORVU4Hr1G054420.3	Barley	nucleus	34.91	34.71
Os01t0305900-01	Rice	nucleus	32.54	34.7
TraesCS1D01G021700.1	Wheat	nucleus	31.95	34.39
CDY49609	Canola	nucleus	35.5	34.38
GSMUA_Achr8P10470_001	Banana	nucleus	37.57	34.23
TraesCS4B01G186000.1	Wheat	nucleus	34.62	33.81
TraesCS4A01G118400.1	Wheat	nucleus	34.62	33.81
Solyc01g111500.2.1	Tomato	nucleus	25.15	33.73
TraesCS4D01G187100.1	Wheat	nucleus	34.32	33.53
Zm00001d028842_P001	Maize	nucleus	33.14	33.43
Zm00001d047671_P001	Maize	nucleus	33.43	32.85
TraesCS1B01G023400.1	Wheat	nucleus	31.07	32.71
GSMUA_Achr5P21250_001	Banana	nucleus	30.77	32.4
TraesCS1B01G049700.1	Wheat	nucleus	30.18	31.78
Zm00001d040621_P002	Maize	nucleus	33.14	31.64
TraesCS1B01G005200.1	Wheat	nucleus	31.07	31.63
Solyc10g055410.1.1	Tomato	nucleus	25.44	31.5
TraesCS1B01G023500.1	Wheat	nucleus	29.88	31.46
TraesCS1A01G021500.1	Wheat	nucleus	31.07	31.16
OQU86782	Sorghum	nucleus	32.84	30.75
EER92385	Sorghum	nucleus	32.25	30.62
Solyc06g065100.2.1	Tomato	nucleus	25.15	30.47
Solyc07g008010.2.1	Tomato	nucleus	18.93	30.33
TraesCS1D01G020900.1	Wheat	nucleus	29.88	29.79
Solyc08g082890.2.1	Tomato	nucleus	24.26	28.98
Solyc08g005870.1.1	Tomato	nucleus	23.08	27.56
Solyc01g005660.1.1	Tomato	nucleus, plastid	24.56	26.95
Solyc08g008480.2.1	Tomato	nucleus	24.56	26.02
Solyc12g049300.1.1	Tomato	nucleus	23.96	23.01

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	UniProt:B4YAJ8	EMBL:EU419748	EMBL:FN555126	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	GO:GO:0045893	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF203	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689
EnsemblPlantsGene:Solyc01g079620.2	EnsemblPlants:Solyc01g079620.2.1	UniParc:UPI00017BA83B	SEG:seg	:	:

Description

MYB12 [Source:UniProtKB/TrEMBL;Acc:B4YAJ8]

Coordinates

chr1:+:78744794..78748076

Molecular Weight (calculated)

38569.4 Da

IEP (calculated)

4.725

GRAVY (calculated)

-0.692

Length

338 amino acids

Sequence
(BLAST)

001: MGRTPCCEKV GIKRGRWTAE EDQILTNYII SNGEGSWRSL PKNAGLLRCG KSCRLRWINY LRSDLKRGNI TSQEEDIIIK LHATLGNRWS LIAEHLSGRT
101: DNEIKNYWNS HLSRKVDSLR IPSDEKLPKA VVDLAKKGIP KPIKKSSISR PKNKKSNLLE KEALCCTNMP ACDSAMELMQ EDLAKIEVPN SWAGPIEAKG
201: SLSSDSDIEW PRLEEIMPDV VIDDEDKNTN FILNCFREEV TSNNVGNSYS CIEEGNKKIS SDDEKIKLLM DWQDNDELVW PTLPWELETD IVPSWPQWDD
301: TDTNLLQNCT NDNNNYEEAT TMEINNQNHS TIVSWLLS

Best Arabidopsis Sequence Match ( AT2G47460.1 )
(BLAST)

001: MGRAPCCEKV GIKRGRWTAE EDQILSNYIQ SNGEGSWRSL PKNAGLKRCG KSCRLRWINY LRSDLKRGNI TPEEEELVVK LHSTLGNRWS LIAGHLPGRT
101: DNEIKNYWNS HLSRKLHNFI RKPSISQDVS AVIMTNASSA PPPPQAKRRL GRTSRSAMKP KIHRTKTRKT KKTSAPPEPN ADVAGADKEA LMVESSGAEA
201: ELGRPCDYYG DDCNKNLMSI NGDNGVLTFD DDIIDLLLDE SDPGHLYTNT TCGGDGELHN IRDSEGARGF SDTWNQGNLD CLLQSCPSVE SFLNYDHQVN
301: DASTDEFIDW DCVWQEGSDN NLWHEKENPD SMVSWLLDGD DEATIGNSNC ENFGEPLDHD DESALVAWLL S

Arabidopsis Description

MYB12Transcription factor MYB12 [Source:UniProtKB/Swiss-Prot;Acc:O22264]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.