Factsheet for Solyc08g005870.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400085829	Potato	nucleus	59.01	90.27
Solyc12g096200.1.1	Tomato	nucleus	31.8	72.0
Solyc05g008250.1.1	Tomato	nucleus	29.33	46.63
Solyc08g082890.2.1	Tomato	nucleus	46.29	46.29
Solyc08g008480.2.1	Tomato	nucleus	45.58	40.44
KRG97208	Soybean	nucleus	39.58	39.86
Solyc01g111500.2.1	Tomato	nucleus	34.98	39.29
VIT_15s0046g00170.t01	Wine grape	nucleus	39.58	39.16
KRH68929	Soybean	nucleus	31.1	35.92
Solyc10g055410.1.1	Tomato	nucleus	32.86	34.07
KRH47884	Soybean	nucleus	34.28	33.45
KRH06443	Soybean	nucleus	33.92	32.76
Solyc06g065100.2.1	Tomato	nucleus	31.45	31.9
Solyc07g008010.2.1	Tomato	nucleus	23.32	31.28
Solyc01g005660.1.1	Tomato	nucleus, plastid	31.1	28.57
Solyc06g009710.2.1	Tomato	nucleus	28.27	26.94
Solyc12g049350.1.1	Tomato	nucleus	27.21	26.28
Solyc12g049300.1.1	Tomato	nucleus	29.68	23.86
Solyc01g079620.2.1	Tomato	nucleus	27.56	23.08

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:K4CI76	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF613
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc08g005870.1	EnsemblPlants:Solyc08g005870.1.1	UniParc:UPI000276BC55
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:+:660681..662383

Molecular Weight (calculated)

32801.4 Da

IEP (calculated)

7.996

GRAVY (calculated)

-1.095

Length

283 amino acids

Sequence
(BLAST)

001: MGRKPCCSKE GLKKGSWTKK EDLLLTEYIK EYGEGTGWRS LPKKAGLLRC GKSCRLRWVN YLKPGLNRGT FTPEEDDLIV RLYTLLGSRW SLIAGRIPGR
101: TDNDIKNYWN TSLLKKLKAQ GNEPREHKSQ AKKRRRKEEK ANVSSQINRK NNNENKKKMK KEKIVEKHNI EDEEATKIEE QPHAQDFAQP VSDSNHNFTS
201: SCSNQDGTSS STSSSEIHSS SQNTEYHNQD EIFEKLQVID ELLLNDNCLF QPEKCIEFNN NENHMLFEEV YEEYFQLVSE NSC

Best Arabidopsis Sequence Match ( AT1G22640.1 )
(BLAST)

001: MGRSPCCEKA HMNKGAWTKE EDQLLVDYIR KHGEGCWRSL PRAAGLQRCG KSCRLRWMNY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLSRG IDPNSHRLIN ESVVSPSSLQ NDVVETIHLD FSGPVKPEPV REEIGMVNNC ESSGTTSEKD YGNEEDWVLN LELSVGPSYR
201: YESTRKVSVV DSAESTRRWG SELFGAHESD AVCLCCRIGL FRNESCRNCR VSDVRTH

Arabidopsis Description

MYB3MYB3 [Source:UniProtKB/TrEMBL;Acc:A0A178WFN1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.