Factsheet for Solyc01g005660.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g081140.2.1
Solyc09g065100.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13540.1	Solyc08g081140.2.1	AT1G63650.1	15361138
AT3G13540.1	Solyc09g065100.1.1	AT4G09820.1	15361138

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g096200.1.1	Tomato	nucleus	25.97	64.0
VIT_06s0004g00570.t01	Wine grape	nucleus, plastid	52.92	52.24
AT3G13540.1	Thale cress	nucleus	41.23	51.0
CDY23616	Canola	nucleus	37.34	50.44
CDY24177	Canola	nucleus	39.94	49.0
VIT_08s0007g07230.t01	Wine grape	nucleus	50.65	48.75
Bra027423.1-P	Field mustard	nucleus	40.26	48.63
CDY59254	Canola	nucleus	40.26	48.63
Bra039395.1-P	Field mustard	nucleus	39.61	48.61
CDY07085	Canola	nucleus	39.61	48.61
GSMUA_Achr2P19380_001	Banana	nucleus	38.31	48.36
Zm00001d011645_P001	Maize	nucleus	36.04	48.26
GSMUA_Achr10P...	Banana	nucleus	46.43	47.99
Solyc05g008250.1.1	Tomato	nucleus	27.6	47.75
GSMUA_Achr6P14840_001	Banana	nucleus	41.88	44.48
TraesCS3D01G257800.1	Wheat	nucleus	38.31	43.54
TraesCS3B01G290600.1	Wheat	nucleus	38.31	43.38
KXG33190	Sorghum	nucleus	39.29	43.21
TraesCS3A01G257800.1	Wheat	nucleus	37.01	43.02
Os01t0695900-01	Rice	nucleus	37.99	42.55
KRH17997	Soybean	nucleus, plastid	48.05	41.81
KRH16413	Soybean	nucleus	48.7	41.55
GSMUA_Achr7P13700_001	Banana	nucleus	39.61	39.74
HORVU0Hr1G006810.2	Barley	nucleus	34.42	39.55
Solyc01g111500.2.1	Tomato	nucleus	30.52	37.3
GSMUA_Achr5P06530_001	Banana	nucleus	44.16	36.27
Solyc07g008010.2.1	Tomato	nucleus	24.35	35.55
Solyc10g055410.1.1	Tomato	nucleus	30.84	34.8
Solyc06g065100.2.1	Tomato	nucleus	30.19	33.33
Solyc08g082890.2.1	Tomato	nucleus	29.55	32.16
Solyc08g005870.1.1	Tomato	nucleus	28.57	31.1
Solyc08g008480.2.1	Tomato	nucleus	29.87	28.84
Solyc12g049350.1.1	Tomato	nucleus	26.3	27.65
Solyc06g009710.2.1	Tomato	nucleus	25.97	26.94
Solyc12g049300.1.1	Tomato	nucleus	29.55	25.85
Solyc01g079620.2.1	Tomato	nucleus	26.95	24.56

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:K4ASD2	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF942
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc01g005660.1	EnsemblPlants:Solyc01g005660.1.1	UniParc:UPI0002761CD5
SEG:seg	:	:	:	:	:

Description

Transcription repressor MYB5 [Source:Projected from Arabidopsis thaliana (AT3G13540) UniProtKB/Swiss-Prot;Acc:Q38850]

Coordinates

chr1:+:460050..461945

Molecular Weight (calculated)

35063.0 Da

IEP (calculated)

6.617

GRAVY (calculated)

-0.826

Length

308 amino acids

Sequence
(BLAST)

001: MRTPSSSSSS SLSSRTKIVT PCCTKIGLKR GPWTPEEDEL LMNYVSKEGE GRWRTLPKKA GLFRCGKSCR LRWMNYLRPS VKRGHILPEE EDLILRLHRL
101: LGNRWSLIAG RIPGRTDNEI KNYWNTHLSK KLINQGIDPR THKPLILNNP NSSNSDDNHI ITNKANSSSP SSSSKLANNY NLNTINIPNP IYTPNFQMKE
201: PLRSSINNNN CPGETTSPDD DYQYQSSNVM LANYRDDDMN IVVHDEGDDE MNCCADDVFS SFLNSLINED MFMNCQNQQI NGTLQDFDHF MASSSPSYDQ
301: NNLKTMDE

Best Arabidopsis Sequence Match ( AT3G13540.1 )
(BLAST)

001: MMSCGGKKPV SKKTTPCCTK MGMKRGPWTV EEDEILVSFI KKEGEGRWRS LPKRAGLLRC GKSCRLRWMN YLRPSVKRGG ITSDEEDLIL RLHRLLGNRW
101: SLIAGRIPGR TDNEIKNYWN THLRKKLLRQ GIDPQTHKPL DANNIHKPEE EVSGGQKYPL EPISSSHTDD TTVNGGDGDS KNSINVFGGE HGYEDFGFCY
201: DDKFSSFLNS LINDVGDPFG NIIPISQPLQ MDDCKDGIVG ASSSSLGHD

Arabidopsis Description

MYB5MYB5 [Source:UniProtKB/TrEMBL;Acc:A0A178VAR4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.