Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07085 | Canola | nucleus | 97.21 | 97.21 |
| CDY23616 | Canola | nucleus | 78.09 | 85.96 |
| CDY59254 | Canola | nucleus | 83.27 | 81.96 |
| AT3G13540.1 | Thale cress | nucleus | 80.48 | 81.12 |
| GSMUA_Achr2P19380_001 | Banana | nucleus | 46.61 | 47.95 |
| GSMUA_Achr6P14840_001 | Banana | nucleus | 53.39 | 46.21 |
| Zm00001d011645_P001 | Maize | nucleus | 40.64 | 44.35 |
| GSMUA_Achr10P... | Banana | nucleus | 52.19 | 43.96 |
| VIT_06s0004g00570.t01 | Wine grape | nucleus, plastid | 52.99 | 42.63 |
| TraesCS3A01G257800.1 | Wheat | nucleus | 44.22 | 41.89 |
| CDX69561 | Canola | nucleus | 32.67 | 41.62 |
| VIT_08s0007g07230.t01 | Wine grape | nucleus | 52.99 | 41.56 |
| CDX91023 | Canola | nucleus | 32.67 | 41.41 |
| TraesCS3D01G257800.1 | Wheat | nucleus | 44.62 | 41.33 |
| CDX85583 | Canola | nucleus | 32.27 | 40.91 |
| CDY09882 | Canola | nucleus | 32.27 | 40.91 |
| TraesCS3B01G290600.1 | Wheat | nucleus | 44.22 | 40.81 |
| Solyc01g005660.1.1 | Tomato | nucleus, plastid | 49.0 | 39.94 |
| HORVU0Hr1G006810.2 | Barley | nucleus | 42.63 | 39.93 |
| CDY27055 | Canola | nucleus | 31.47 | 39.9 |
| Os01t0695900-01 | Rice | nucleus | 43.43 | 39.64 |
| CDX90721 | Canola | nucleus | 35.06 | 39.29 |
| CDX91687 | Canola | nucleus | 35.06 | 39.11 |
| KXG33190 | Sorghum | nucleus | 43.43 | 38.93 |
| CDY65324 | Canola | nucleus | 31.47 | 38.92 |
| GSMUA_Achr7P13700_001 | Banana | nucleus | 47.41 | 38.76 |
| KRH17997 | Soybean | nucleus, plastid | 54.18 | 38.42 |
| CDY05057 | Canola | nucleus | 34.66 | 38.33 |
| CDY51833 | Canola | nucleus | 30.28 | 38.19 |
| CDY56151 | Canola | nucleus | 29.48 | 37.19 |
| KRH16413 | Soybean | nucleus | 52.99 | 36.84 |
| CDY66972 | Canola | nucleus | 29.08 | 36.5 |
| GSMUA_Achr5P06530_001 | Banana | nucleus | 52.19 | 34.93 |
| CDX86461 | Canola | nucleus | 30.28 | 33.78 |
| CDY44571 | Canola | nucleus | 34.26 | 33.73 |
| CDY21378 | Canola | nucleus | 35.86 | 33.46 |
| CDY04798 | Canola | nucleus | 35.86 | 33.46 |
| CDY25747 | Canola | nucleus | 35.06 | 33.33 |
| CDX90285 | Canola | nucleus | 37.45 | 33.22 |
| CDX72510 | Canola | nucleus | 35.86 | 33.21 |
| CDY40652 | Canola | nucleus | 35.86 | 33.21 |
| CDY12520 | Canola | nucleus | 34.66 | 31.99 |
| CDX69102 | Canola | nucleus | 36.26 | 31.82 |
| CDX75478 | Canola | nucleus | 36.26 | 31.71 |
| CDY22416 | Canola | nucleus | 37.05 | 31.63 |
| CDX72743 | Canola | nucleus | 37.05 | 31.63 |
| CDY02243 | Canola | nucleus | 35.46 | 31.01 |
| CDY72116 | Canola | nucleus | 35.46 | 31.01 |
| CDY49363 | Canola | nucleus | 31.87 | 30.65 |
| CDX84119 | Canola | nucleus | 31.87 | 30.65 |
| CDY05636 | Canola | nucleus | 35.06 | 30.34 |
| CDY12092 | Canola | nucleus | 36.65 | 30.26 |
| CDY52797 | Canola | nucleus | 30.68 | 29.84 |
| CDY00035 | Canola | nucleus | 33.86 | 25.76 |
| CDX86237 | Canola | nucleus | 35.06 | 25.66 |
| CDX95725 | Canola | nucleus | 35.86 | 25.5 |
| CDX85403 | Canola | nucleus | 34.66 | 25.44 |
| CDX83327 | Canola | nucleus | 35.46 | 25.28 |
| CDY49609 | Canola | nucleus | 34.26 | 24.64 |
| CDY55384 | Canola | nucleus | 26.69 | 22.71 |
| CDX80105 | Canola | nucleus | 27.89 | 21.41 |
| CDY27486 | Canola | plastid | 3.98 | 4.24 |
Protein Annotations
| EnsemblPlants:CDY24177 | EnsemblPlantsGene:GSBRNA2T00026260001 | Gene3D:1.10.10.60 | GO:A0A078GGA4 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF740 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDY24177 | ProteinID:CDY24177.1 |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EF23EB | UniProt:A0A078GGA4 | MapMan:15.5.2.1 | : |
Description
BnaC01g37570DBnaC01g37570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GGA4]
Coordinates
chrLK032155:-:24015..25373
Molecular Weight (calculated)
28087.3 Da
IEP (calculated)
7.856
GRAVY (calculated)
-0.711
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSSGGKKQV VKKMIPCCMK MGMKRGPWTA EEDEILVSFI KKEGEGRWRS LPKRAGLLRC GKSCRLRWMN YLRPSVKRGG ITPDEEDLIL RLHRLLGNRW
101: SLIAGRIPGR TDNEIKNYWN THLRKKLLSE GIDPQTHKPL DANNAHHKPG EEVSGGQNLL EPNSSSHTDD TTVNSGNEAT KITFSVFGGE DNEDFGFCYD
201: DKFSSFLNAL INDDPFDSNI PLSQPLRTQD CTGAIAGTSS SLEHGQRLED I
101: SLIAGRIPGR TDNEIKNYWN THLRKKLLSE GIDPQTHKPL DANNAHHKPG EEVSGGQNLL EPNSSSHTDD TTVNSGNEAT KITFSVFGGE DNEDFGFCYD
201: DKFSSFLNAL INDDPFDSNI PLSQPLRTQD CTGAIAGTSS SLEHGQRLED I
001: MMSCGGKKPV SKKTTPCCTK MGMKRGPWTV EEDEILVSFI KKEGEGRWRS LPKRAGLLRC GKSCRLRWMN YLRPSVKRGG ITSDEEDLIL RLHRLLGNRW
101: SLIAGRIPGR TDNEIKNYWN THLRKKLLRQ GIDPQTHKPL DANNIHKPEE EVSGGQKYPL EPISSSHTDD TTVNGGDGDS KNSINVFGGE HGYEDFGFCY
201: DDKFSSFLNS LINDVGDPFG NIIPISQPLQ MDDCKDGIVG ASSSSLGHD
101: SLIAGRIPGR TDNEIKNYWN THLRKKLLRQ GIDPQTHKPL DANNIHKPEE EVSGGQKYPL EPISSSHTDD TTVNGGDGDS KNSINVFGGE HGYEDFGFCY
201: DDKFSSFLNS LINDVGDPFG NIIPISQPLQ MDDCKDGIVG ASSSSLGHD
Arabidopsis Description
MYB5MYB5 [Source:UniProtKB/TrEMBL;Acc:A0A178VAR4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.