Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G22640.1 | CDX76438 | AT4G21670.1 | 18541146 |
| AT1G22640.1 | CDX79083 | AT4G21670.1 | 18541146 |
| AT1G22640.1 | CDX94046 | AT4G21670.1 | 18541146 |
| AT1G22640.1 | CDX98696 | AT4G21670.1 | 18541146 |
| AT1G22640.1 | CDY31421 | AT4G21670.1 | 18541146 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY25747 | Canola | nucleus | 82.22 | 70.08 |
| CDY21378 | Canola | nucleus | 83.56 | 69.89 |
| CDY12520 | Canola | nucleus | 84.0 | 69.49 |
| CDY04798 | Canola | nucleus | 81.33 | 68.03 |
| AT1G22640.1 | Thale cress | nucleus | 76.44 | 66.93 |
| CDX90721 | Canola | nucleus | 54.67 | 54.91 |
| CDY05057 | Canola | nucleus | 53.78 | 53.3 |
| CDX72510 | Canola | nucleus | 52.89 | 43.91 |
| CDY40652 | Canola | nucleus | 52.89 | 43.91 |
| CDX90285 | Canola | nucleus | 55.11 | 43.82 |
| VIT_07s0130g00040.t01 | Wine grape | nucleus | 56.44 | 43.79 |
| CDY72116 | Canola | nucleus | 55.56 | 43.55 |
| CDY02243 | Canola | nucleus | 55.56 | 43.55 |
| KRH54016 | Soybean | nucleus | 58.22 | 43.52 |
| CDX69102 | Canola | nucleus | 54.22 | 42.66 |
| CDX72743 | Canola | nucleus | 55.56 | 42.52 |
| CDY22416 | Canola | nucleus | 55.56 | 42.52 |
| CDX75478 | Canola | nucleus | 54.22 | 42.51 |
| KRH63931 | Soybean | nucleus | 56.89 | 42.38 |
| CDY52797 | Canola | nucleus | 48.44 | 42.25 |
| CDY12092 | Canola | nucleus | 55.11 | 40.79 |
| CDX69561 | Canola | nucleus | 34.22 | 39.09 |
| CDY23616 | Canola | nucleus | 39.11 | 38.6 |
| CDX91023 | Canola | nucleus | 33.78 | 38.38 |
| CDY09882 | Canola | nucleus | 33.78 | 38.38 |
| CDX85583 | Canola | nucleus | 33.33 | 37.88 |
| CDY27055 | Canola | nucleus | 32.89 | 37.37 |
| CDY65324 | Canola | nucleus | 33.33 | 36.95 |
| CDY59254 | Canola | nucleus | 40.44 | 35.69 |
| CDY56151 | Canola | nucleus | 31.56 | 35.68 |
| CDY07085 | Canola | nucleus | 39.56 | 35.46 |
| CDY24177 | Canola | nucleus | 39.11 | 35.06 |
| CDY51833 | Canola | nucleus | 30.67 | 34.67 |
| CDX84119 | Canola | nucleus | 38.22 | 32.95 |
| CDY49363 | Canola | nucleus | 37.78 | 32.57 |
| CDY66972 | Canola | nucleus | 28.89 | 32.5 |
| CDX86461 | Canola | nucleus | 30.67 | 30.67 |
| CDY44571 | Canola | nucleus | 32.44 | 28.63 |
| CDY05636 | Canola | nucleus | 36.44 | 28.28 |
| CDY00035 | Canola | nucleus | 40.44 | 27.58 |
| CDX86237 | Canola | nucleus | 40.0 | 26.24 |
| CDX85403 | Canola | nucleus | 39.56 | 26.02 |
| CDX83327 | Canola | nucleus | 40.44 | 25.85 |
| CDY49609 | Canola | nucleus | 40.0 | 25.79 |
| CDX95725 | Canola | nucleus | 40.0 | 25.5 |
| CDY55384 | Canola | nucleus | 30.67 | 23.39 |
| CDX80105 | Canola | nucleus | 30.67 | 21.1 |
| CDY27486 | Canola | plastid | 5.78 | 5.51 |
Protein Annotations
| EnsemblPlants:CDX91687 | EnsemblPlantsGene:GSBRNA2T00153163001 | Gene3D:1.10.10.60 | GO:A0A078DS11 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF949 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDX91687 | ProteinID:CDX91687.1 |
| SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EEDF79 | MapMan:15.5.2.1 | : |
Description
BnaC08g06060D
Coordinates
chrLK031869:+:193259..194225
Molecular Weight (calculated)
25848.6 Da
IEP (calculated)
8.580
GRAVY (calculated)
-0.890
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRSPCCEKS HMNKGAWIKE EDQLLVDYIR KHGEGCWRSL PRAAGLQRCG KSCRLRWMNY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLSRG IDPNTHRTIN ESTIPLPKTA AFLLNDEHVK FGFAGPDEQR TIKPEPMVVD REEYNNKNNN NCTSSGTTSE KDIETDDDYV
201: LNLELSVGLA TTTKSNRYES NRIGK
101: DNEIKNYWNT HIKRKLLSRG IDPNTHRTIN ESTIPLPKTA AFLLNDEHVK FGFAGPDEQR TIKPEPMVVD REEYNNKNNN NCTSSGTTSE KDIETDDDYV
201: LNLELSVGLA TTTKSNRYES NRIGK
001: MGRSPCCEKA HMNKGAWTKE EDQLLVDYIR KHGEGCWRSL PRAAGLQRCG KSCRLRWMNY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLSRG IDPNSHRLIN ESVVSPSSLQ NDVVETIHLD FSGPVKPEPV REEIGMVNNC ESSGTTSEKD YGNEEDWVLN LELSVGPSYR
201: YESTRKVSVV DSAESTRRWG SELFGAHESD AVCLCCRIGL FRNESCRNCR VSDVRTH
101: DNEIKNYWNT HIKRKLLSRG IDPNSHRLIN ESVVSPSSLQ NDVVETIHLD FSGPVKPEPV REEIGMVNNC ESSGTTSEKD YGNEEDWVLN LELSVGPSYR
201: YESTRKVSVV DSAESTRRWG SELFGAHESD AVCLCCRIGL FRNESCRNCR VSDVRTH
Arabidopsis Description
MYB3MYB3 [Source:UniProtKB/TrEMBL;Acc:A0A178WFN1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.