Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G22640.1 | CDX76438 | AT4G21670.1 | 18541146 |
| AT1G22640.1 | CDX79083 | AT4G21670.1 | 18541146 |
| AT1G22640.1 | CDX94046 | AT4G21670.1 | 18541146 |
| AT1G22640.1 | CDX98696 | AT4G21670.1 | 18541146 |
| AT1G22640.1 | CDY31421 | AT4G21670.1 | 18541146 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY25747 | Canola | nucleus | 91.18 | 93.94 |
| Bra012337.1-P | Field mustard | nucleus | 94.85 | 93.48 |
| CDX91687 | Canola | nucleus | 69.49 | 84.0 |
| CDY21378 | Canola | nucleus | 82.72 | 83.64 |
| CDY04798 | Canola | nucleus | 81.99 | 82.9 |
| AT1G22640.1 | Thale cress | nucleus | 76.84 | 81.32 |
| CDX90721 | Canola | nucleus | 45.59 | 55.36 |
| CDY05057 | Canola | nucleus | 45.59 | 54.63 |
| CDY40652 | Canola | nucleus | 46.69 | 46.86 |
| CDX72510 | Canola | nucleus | 46.69 | 46.86 |
| VIT_07s0130g00040.t01 | Wine grape | nucleus | 49.26 | 46.21 |
| CDX69102 | Canola | nucleus | 47.43 | 45.1 |
| CDX75478 | Canola | nucleus | 47.43 | 44.95 |
| CDX90285 | Canola | nucleus | 46.69 | 44.88 |
| CDY02243 | Canola | nucleus | 46.69 | 44.25 |
| CDY72116 | Canola | nucleus | 46.69 | 44.25 |
| CDX72743 | Canola | nucleus | 47.79 | 44.22 |
| CDY22416 | Canola | nucleus | 47.79 | 44.22 |
| KRH54016 | Soybean | nucleus | 48.53 | 43.85 |
| CDY52797 | Canola | nucleus | 41.18 | 43.41 |
| KRH63931 | Soybean | nucleus | 47.43 | 42.72 |
| CDY12092 | Canola | nucleus | 47.06 | 42.11 |
| CDY23616 | Canola | nucleus | 33.09 | 39.47 |
| CDX69561 | Canola | nucleus | 27.94 | 38.58 |
| CDX85583 | Canola | nucleus | 27.94 | 38.38 |
| CDX91023 | Canola | nucleus | 27.57 | 37.88 |
| CDY09882 | Canola | nucleus | 27.57 | 37.88 |
| CDY59254 | Canola | nucleus | 34.19 | 36.47 |
| CDY27055 | Canola | nucleus | 26.47 | 36.36 |
| CDY65324 | Canola | nucleus | 26.47 | 35.47 |
| CDY07085 | Canola | nucleus | 32.35 | 35.06 |
| CDY24177 | Canola | nucleus | 31.99 | 34.66 |
| CDY56151 | Canola | nucleus | 25.0 | 34.17 |
| CDX84119 | Canola | nucleus | 32.35 | 33.72 |
| CDY51833 | Canola | nucleus | 24.63 | 33.67 |
| CDY49363 | Canola | nucleus | 31.99 | 33.33 |
| CDY66972 | Canola | nucleus | 23.9 | 32.5 |
| CDX86461 | Canola | nucleus | 24.63 | 29.78 |
| CDY44571 | Canola | nucleus | 27.57 | 29.41 |
| CDY05636 | Canola | nucleus | 30.15 | 28.28 |
| CDY00035 | Canola | nucleus | 32.72 | 26.97 |
| CDX83327 | Canola | nucleus | 33.46 | 25.85 |
| CDX95725 | Canola | nucleus | 33.46 | 25.78 |
| CDX86237 | Canola | nucleus | 32.35 | 25.66 |
| CDY49609 | Canola | nucleus | 32.72 | 25.5 |
| CDX85403 | Canola | nucleus | 31.99 | 25.44 |
| CDY55384 | Canola | nucleus | 25.37 | 23.39 |
| CDX80105 | Canola | nucleus | 25.37 | 21.1 |
| CDY27486 | Canola | plastid | 5.51 | 6.36 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078FDU5 | UniProt:A0A078FDU5 | EnsemblPlants:CDY12520 | ProteinID:CDY12520 |
| ProteinID:CDY12520.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00061862001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF949 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EE8F19 | SEG:seg |
Description
BnaC07g13600DBnaC07g13600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FDU5]
Coordinates
chrLK032023:-:648395..649491
Molecular Weight (calculated)
31128.8 Da
IEP (calculated)
8.486
GRAVY (calculated)
-0.835
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRSPCCEKA HMNKGAWTKE EDQLLVDYIR KHGEGCWRSL PRAAGLQRCG KSCRLRWMNY LRPDLKRGNF AEEEDELIIK LHSLFGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLSRG IDPNTHRSIN GSTTPPPKTT KSSLQNDEPV RFEISGPDQQ RIVKPEPMVL DREDANNKCT SSGTTSEKDI QTDDDWVLNL
201: ELSVGPATTK SYRYELTRKA NPDLAESTRR WSFELLGAQA EVCLCCRIGF HNESCRNCRT SDVTTTWESK IL
101: DNEIKNYWNT HIKRKLLSRG IDPNTHRSIN GSTTPPPKTT KSSLQNDEPV RFEISGPDQQ RIVKPEPMVL DREDANNKCT SSGTTSEKDI QTDDDWVLNL
201: ELSVGPATTK SYRYELTRKA NPDLAESTRR WSFELLGAQA EVCLCCRIGF HNESCRNCRT SDVTTTWESK IL
001: MGRSPCCEKA HMNKGAWTKE EDQLLVDYIR KHGEGCWRSL PRAAGLQRCG KSCRLRWMNY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLSRG IDPNSHRLIN ESVVSPSSLQ NDVVETIHLD FSGPVKPEPV REEIGMVNNC ESSGTTSEKD YGNEEDWVLN LELSVGPSYR
201: YESTRKVSVV DSAESTRRWG SELFGAHESD AVCLCCRIGL FRNESCRNCR VSDVRTH
101: DNEIKNYWNT HIKRKLLSRG IDPNSHRLIN ESVVSPSSLQ NDVVETIHLD FSGPVKPEPV REEIGMVNNC ESSGTTSEKD YGNEEDWVLN LELSVGPSYR
201: YESTRKVSVV DSAESTRRWG SELFGAHESD AVCLCCRIGL FRNESCRNCR VSDVRTH
Arabidopsis Description
MYB3MYB3 [Source:UniProtKB/TrEMBL;Acc:A0A178WFN1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.