Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013055.1-P | Field mustard | nucleus | 100.0 | 99.65 |
| CDY72116 | Canola | nucleus | 98.95 | 98.95 |
| AT2G16720.1 | Thale cress | nucleus | 77.35 | 82.53 |
| CDX69102 | Canola | nucleus | 66.2 | 66.43 |
| CDX75478 | Canola | nucleus | 66.2 | 66.2 |
| CDY40652 | Canola | nucleus | 61.67 | 65.31 |
| CDX72510 | Canola | nucleus | 61.32 | 64.94 |
| CDX91687 | Canola | nucleus | 43.55 | 55.56 |
| CDX90285 | Canola | nucleus | 54.36 | 55.12 |
| CDX72743 | Canola | nucleus | 54.36 | 53.06 |
| CDY22416 | Canola | nucleus | 54.36 | 53.06 |
| CDX90721 | Canola | nucleus | 40.42 | 51.79 |
| CDY52797 | Canola | nucleus | 45.64 | 50.78 |
| CDY12092 | Canola | nucleus | 53.66 | 50.66 |
| CDY05057 | Canola | nucleus | 39.72 | 50.22 |
| CDY25747 | Canola | nucleus | 44.25 | 48.11 |
| CDY04798 | Canola | nucleus | 44.95 | 47.96 |
| CDY21378 | Canola | nucleus | 44.6 | 47.58 |
| CDY12520 | Canola | nucleus | 44.25 | 46.69 |
| KRH54016 | Soybean | nucleus | 47.39 | 45.18 |
| VIT_07s0130g00040.t01 | Wine grape | nucleus | 45.3 | 44.83 |
| KRH63931 | Soybean | nucleus | 46.34 | 44.04 |
| CDY27055 | Canola | nucleus | 26.13 | 37.88 |
| CDY23616 | Canola | nucleus | 29.97 | 37.72 |
| CDY65324 | Canola | nucleus | 26.48 | 37.44 |
| CDX69561 | Canola | nucleus | 24.74 | 36.04 |
| CDY07085 | Canola | nucleus | 31.36 | 35.86 |
| CDY56151 | Canola | nucleus | 24.74 | 35.68 |
| CDY24177 | Canola | nucleus | 31.01 | 35.46 |
| CDY09882 | Canola | nucleus | 24.39 | 35.35 |
| CDY59254 | Canola | nucleus | 31.36 | 35.29 |
| CDY51833 | Canola | nucleus | 24.39 | 35.18 |
| CDX85583 | Canola | nucleus | 23.69 | 34.34 |
| CDX91023 | Canola | nucleus | 23.69 | 34.34 |
| CDY66972 | Canola | nucleus | 22.3 | 32.0 |
| CDY49363 | Canola | nucleus | 28.92 | 31.8 |
| CDX84119 | Canola | nucleus | 28.92 | 31.8 |
| CDX86461 | Canola | nucleus | 23.34 | 29.78 |
| CDY05636 | Canola | nucleus | 29.27 | 28.97 |
| CDY00035 | Canola | nucleus | 30.31 | 26.36 |
| CDY44571 | Canola | nucleus | 23.34 | 26.27 |
| CDX83327 | Canola | nucleus | 31.36 | 25.57 |
| CDY49609 | Canola | nucleus | 31.01 | 25.5 |
| CDX86237 | Canola | nucleus | 30.31 | 25.36 |
| CDX95725 | Canola | nucleus | 31.01 | 25.21 |
| CDX85403 | Canola | nucleus | 29.97 | 25.15 |
| CDY55384 | Canola | nucleus | 24.04 | 23.39 |
| CDX80105 | Canola | nucleus | 24.39 | 21.41 |
| CDY27486 | Canola | plastid | 5.23 | 6.36 |
Protein Annotations
| EnsemblPlants:CDY02243 | EnsemblPlantsGene:GSBRNA2T00113663001 | Gene3D:1.10.10.60 | GO:A0A078ERT3 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF741 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDY02243 | ProteinID:CDY02243.1 |
| SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0001B347CA | MapMan:15.5.2.1 | : |
Description
BnaA03g39240D
Coordinates
chrLK031932:+:906101..907276
Molecular Weight (calculated)
32924.8 Da
IEP (calculated)
8.729
GRAVY (calculated)
-0.846
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRSPCCEKE HMNKGAWTKE EDERLVSYIK SHGEGCWRSL PRAAGLLRCG KSCRLRWINY LRPDLKRGNF TRDEDEVIIN LHSLIGNKWS LIAARLPGRT
101: DNEIKNYWNT HIKRKLLSKG IDPNTHRSIN AGKVSDSKKT EDQVVKDVSF GSLFDKTEKS EEQKQNKKQK QNLINGLVCK EERVEHHPAV VVQEIFCPNL
201: NLELRISPPW HNKNHDDHTR EKSTTYTASR LYVQNGMESS SDTAKCQTED SSSISHSSLD ISSISSVGYD FLGLNTRFMD FRSLEMN
101: DNEIKNYWNT HIKRKLLSKG IDPNTHRSIN AGKVSDSKKT EDQVVKDVSF GSLFDKTEKS EEQKQNKKQK QNLINGLVCK EERVEHHPAV VVQEIFCPNL
201: NLELRISPPW HNKNHDDHTR EKSTTYTASR LYVQNGMESS SDTAKCQTED SSSISHSSLD ISSISSVGYD FLGLNTRFMD FRSLEMN
001: MGRSPCCEKE HMNKGAWTKE EDERLVSYIK SHGEGCWRSL PRAAGLLRCG KSCRLRWINY LRPDLKRGNF THDEDELIIK LHSLLGNKWS LIAARLPGRT
101: DNEIKNYWNT HIKRKLLSKG IDPATHRGIN EAKISDLKKT KDQIVKDVSF VTKFEETDKS GDQKQNKYIR NGLVCKEERV VVEEKIGPDL NLELRISPPW
201: QNQREISTCT ASRFYMENDM ECSSETVKCQ TENSSSISYS SIDISSSNVG YDFLGLKTRI LDFRSLEMK
101: DNEIKNYWNT HIKRKLLSKG IDPATHRGIN EAKISDLKKT KDQIVKDVSF VTKFEETDKS GDQKQNKYIR NGLVCKEERV VVEEKIGPDL NLELRISPPW
201: QNQREISTCT ASRFYMENDM ECSSETVKCQ TENSSSISYS SIDISSSNVG YDFLGLKTRI LDFRSLEMK
Arabidopsis Description
MYB7Transcription factor MYB7 [Source:UniProtKB/Swiss-Prot;Acc:Q42379]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.