Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55384 | Canola | nucleus | 22.03 | 17.63 |
| CDX80105 | Canola | nucleus | 21.61 | 15.6 |
| CDX83327 | Canola | nucleus | 22.46 | 15.06 |
| CDX95725 | Canola | nucleus | 22.03 | 14.73 |
| TraesCS1D01G021700.1 | Wheat | nucleus | 13.14 | 9.87 |
| TraesCS4A01G118400.1 | Wheat | nucleus | 14.41 | 9.83 |
| TraesCS4D01G187100.1 | Wheat | nucleus | 13.98 | 9.54 |
| TraesCS4B01G186000.1 | Wheat | nucleus | 13.98 | 9.54 |
| HORVU4Hr1G054420.3 | Barley | nucleus | 13.14 | 9.12 |
| TraesCS1B01G005200.1 | Wheat | nucleus | 12.71 | 9.04 |
| Os01t0305900-01 | Rice | nucleus | 11.86 | 8.83 |
| TraesCS1B01G049700.1 | Wheat | nucleus | 11.86 | 8.72 |
| TraesCS1B01G023400.1 | Wheat | nucleus | 11.86 | 8.72 |
| TraesCS1B01G023500.1 | Wheat | nucleus | 11.02 | 8.1 |
| CDX85403 | Canola | nucleus | 11.44 | 7.89 |
| CDX86237 | Canola | nucleus | 11.44 | 7.87 |
| TraesCS1D01G020900.1 | Wheat | nucleus | 11.02 | 7.67 |
| OQU86782 | Sorghum | nucleus | 11.44 | 7.48 |
| TraesCS1A01G021500.1 | Wheat | nucleus | 10.17 | 7.12 |
| CDY40652 | Canola | nucleus | 8.05 | 7.01 |
| CDY05636 | Canola | nucleus | 8.47 | 6.9 |
| CDY49363 | Canola | nucleus | 7.63 | 6.9 |
| CDY49609 | Canola | nucleus | 10.17 | 6.88 |
| Zm00001d047671_P001 | Maize | nucleus | 9.75 | 6.69 |
| CDY00035 | Canola | nucleus | 9.32 | 6.67 |
| CDX72510 | Canola | nucleus | 7.63 | 6.64 |
| CDX84119 | Canola | nucleus | 7.2 | 6.51 |
| Zm00001d040621_P002 | Maize | nucleus | 9.75 | 6.5 |
| CDX69102 | Canola | nucleus | 7.63 | 6.29 |
| CDX75478 | Canola | nucleus | 7.63 | 6.27 |
| Zm00001d028842_P001 | Maize | nucleus | 8.9 | 6.27 |
| CDX91687 | Canola | nucleus | 5.51 | 5.78 |
| CDY25747 | Canola | nucleus | 6.36 | 5.68 |
| CDY21378 | Canola | nucleus | 6.36 | 5.58 |
| CDY12520 | Canola | nucleus | 6.36 | 5.51 |
| CDX72743 | Canola | nucleus | 6.78 | 5.44 |
| CDY22416 | Canola | nucleus | 6.78 | 5.44 |
| CDY52797 | Canola | nucleus | 5.93 | 5.43 |
| EER92385 | Sorghum | nucleus | 8.05 | 5.34 |
| CDX90285 | Canola | nucleus | 6.36 | 5.3 |
| CDY02243 | Canola | nucleus | 6.36 | 5.23 |
| CDY72116 | Canola | nucleus | 6.36 | 5.23 |
| CDY04798 | Canola | nucleus | 5.93 | 5.2 |
| CDY09882 | Canola | nucleus | 4.24 | 5.05 |
| CDY12092 | Canola | nucleus | 6.36 | 4.93 |
| CDY05057 | Canola | nucleus | 4.66 | 4.85 |
| CDX69561 | Canola | nucleus | 3.81 | 4.57 |
| CDX85583 | Canola | nucleus | 3.81 | 4.55 |
| CDY56151 | Canola | nucleus | 3.81 | 4.52 |
| CDY51833 | Canola | nucleus | 3.81 | 4.52 |
| CDX90721 | Canola | nucleus | 4.24 | 4.46 |
| CDY23616 | Canola | nucleus | 4.24 | 4.39 |
| CDX91023 | Canola | nucleus | 3.39 | 4.04 |
| CDY07085 | Canola | nucleus | 4.24 | 3.98 |
| CDY24177 | Canola | nucleus | 4.24 | 3.98 |
| CDY59254 | Canola | nucleus | 4.24 | 3.92 |
| CDX86461 | Canola | nucleus | 3.39 | 3.56 |
| CDY27055 | Canola | nucleus | 2.97 | 3.54 |
| CDY44571 | Canola | nucleus | 3.81 | 3.53 |
| CDY65324 | Canola | nucleus | 2.97 | 3.45 |
| CDY66972 | Canola | nucleus | 1.69 | 2.0 |
Protein Annotations
| EnsemblPlants:CDY27486 | EnsemblPlantsGene:GSBRNA2T00038144001 | ProteinID:CDY27486 | ProteinID:CDY27486.1 | SEG:seg | UniParc:UPI0004EE1444 |
| UniProt:A0A078GQA1 | MapMan:35.1 | : | : | : | : |
Description
BnaC04g51270DBnaC04g51270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQA1]
Coordinates
chrLK032205:-:233064..233839
Molecular Weight (calculated)
25324.1 Da
IEP (calculated)
3.971
GRAVY (calculated)
-0.575
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MNVPPASPRP PSKRRPGRTS RSAMKPKTRK TKRTSAPPEP EADVAVKEVA GEEAIMMELS GAEAELGPCD YYGAYHEGGD CCNNNNNLMG TNGDNLVLSF
101: DDNIMDLLLD EADACNVLTS CGGDAELSHL GDSEVARGLS ETSINQGNLD CLQPCPSVQS LINYELPATD ASMDECIDWH EGNRNSLCGE KEGSDSIVSW
201: LLDGDDDATV GKTNCENFGE PLDHDEENAL VAWLVS
101: DDNIMDLLLD EADACNVLTS CGGDAELSHL GDSEVARGLS ETSINQGNLD CLQPCPSVQS LINYELPATD ASMDECIDWH EGNRNSLCGE KEGSDSIVSW
201: LLDGDDDATV GKTNCENFGE PLDHDEENAL VAWLVS
001: MGRAPCCEKV GIKRGRWTAE EDQILSNYIQ SNGEGSWRSL PKNAGLKRCG KSCRLRWINY LRSDLKRGNI TPEEEELVVK LHSTLGNRWS LIAGHLPGRT
101: DNEIKNYWNS HLSRKLHNFI RKPSISQDVS AVIMTNASSA PPPPQAKRRL GRTSRSAMKP KIHRTKTRKT KKTSAPPEPN ADVAGADKEA LMVESSGAEA
201: ELGRPCDYYG DDCNKNLMSI NGDNGVLTFD DDIIDLLLDE SDPGHLYTNT TCGGDGELHN IRDSEGARGF SDTWNQGNLD CLLQSCPSVE SFLNYDHQVN
301: DASTDEFIDW DCVWQEGSDN NLWHEKENPD SMVSWLLDGD DEATIGNSNC ENFGEPLDHD DESALVAWLL S
101: DNEIKNYWNS HLSRKLHNFI RKPSISQDVS AVIMTNASSA PPPPQAKRRL GRTSRSAMKP KIHRTKTRKT KKTSAPPEPN ADVAGADKEA LMVESSGAEA
201: ELGRPCDYYG DDCNKNLMSI NGDNGVLTFD DDIIDLLLDE SDPGHLYTNT TCGGDGELHN IRDSEGARGF SDTWNQGNLD CLLQSCPSVE SFLNYDHQVN
301: DASTDEFIDW DCVWQEGSDN NLWHEKENPD SMVSWLLDGD DEATIGNSNC ENFGEPLDHD DESALVAWLL S
Arabidopsis Description
MYB12Transcription factor MYB12 [Source:UniProtKB/Swiss-Prot;Acc:O22264]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.