Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008740.1-P | Field mustard | nucleus | 96.97 | 97.46 |
| CDX69561 | Canola | nucleus | 96.97 | 97.46 |
| CDX91023 | Canola | nucleus | 92.42 | 92.42 |
| CDX85583 | Canola | nucleus | 91.92 | 91.92 |
| AT5G14750.1 | Thale cress | nucleus | 91.92 | 89.66 |
| VIT_14s0066g01220.t01 | Wine grape | nucleus | 58.59 | 53.46 |
| CDY66972 | Canola | nucleus | 51.01 | 50.5 |
| CDX86461 | Canola | nucleus | 57.07 | 50.22 |
| CDY44571 | Canola | nucleus | 64.65 | 50.2 |
| CDY27055 | Canola | nucleus | 39.9 | 39.9 |
| CDY65324 | Canola | nucleus | 39.9 | 38.92 |
| CDY56151 | Canola | nucleus | 38.89 | 38.69 |
| CDY51833 | Canola | nucleus | 38.89 | 38.69 |
| CDY23616 | Canola | nucleus | 40.4 | 35.09 |
| CDX91687 | Canola | nucleus | 38.38 | 33.78 |
| GSMUA_Achr3P07950_001 | Banana | nucleus | 39.9 | 33.19 |
| CDY24177 | Canola | nucleus | 40.91 | 32.27 |
| CDY07085 | Canola | nucleus | 40.91 | 32.27 |
| CDY05057 | Canola | nucleus | 36.87 | 32.16 |
| CDX90721 | Canola | nucleus | 36.36 | 32.14 |
| CDY59254 | Canola | nucleus | 40.91 | 31.76 |
| CDY21378 | Canola | nucleus | 38.89 | 28.62 |
| CDY04798 | Canola | nucleus | 38.89 | 28.62 |
| CDY25747 | Canola | nucleus | 37.88 | 28.41 |
| CDY49363 | Canola | nucleus | 37.37 | 28.35 |
| GSMUA_Achr3P27700_001 | Banana | nucleus | 38.89 | 28.1 |
| CDX84119 | Canola | nucleus | 36.87 | 27.97 |
| CDY12520 | Canola | nucleus | 37.88 | 27.57 |
| CDX72510 | Canola | nucleus | 37.37 | 27.31 |
| CDY40652 | Canola | nucleus | 37.37 | 27.31 |
| CDX90285 | Canola | nucleus | 38.89 | 27.21 |
| CDY22416 | Canola | nucleus | 39.39 | 26.53 |
| CDX72743 | Canola | nucleus | 39.39 | 26.53 |
| CDX75478 | Canola | nucleus | 37.88 | 26.13 |
| CDY52797 | Canola | nucleus | 33.84 | 25.97 |
| CDX69102 | Canola | nucleus | 37.37 | 25.87 |
| CDY12092 | Canola | nucleus | 38.89 | 25.33 |
| CDY02243 | Canola | nucleus | 35.35 | 24.39 |
| CDY72116 | Canola | nucleus | 35.35 | 24.39 |
| CDY05636 | Canola | nucleus | 35.35 | 24.14 |
| CDY00035 | Canola | nucleus | 36.36 | 21.82 |
| CDX86237 | Canola | nucleus | 36.36 | 20.99 |
| CDX85403 | Canola | nucleus | 35.86 | 20.76 |
| CDY49609 | Canola | nucleus | 36.36 | 20.63 |
| CDX95725 | Canola | nucleus | 35.35 | 19.83 |
| CDX83327 | Canola | nucleus | 34.85 | 19.6 |
| CDY55384 | Canola | nucleus | 28.79 | 19.32 |
| CDX80105 | Canola | nucleus | 28.79 | 17.43 |
| CDY27486 | Canola | plastid | 5.05 | 4.24 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078F9Z2 | UniProt:A0A078F9Z2 | EnsemblPlants:CDY09882 | ProteinID:CDY09882 |
| ProteinID:CDY09882.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00031637001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF625 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EDB602 | SEG:seg |
Description
BnaC09g42790DBnaC09g42790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F9Z2]
Coordinates
chrLK031999:-:829283..830780
Molecular Weight (calculated)
23083.3 Da
IEP (calculated)
9.077
GRAVY (calculated)
-0.949
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKNVSSSGE EGNNEYKKGL WTVEEDKILM DYVKAHGKGH WNRIAKKTGL KRCGKSCRLR WMNYLSPNVK RGNFTDQEED LIIRLHKLLG NRWSLIAKRV
101: PGRTDNQVKN YWNTHLSKKL GTKDPKNKPS NGDIVYQINL TNPTETLEET KIWNINDNDE IQEDRHGSNY LSSLWVHDDA FELSTLTNMM DFLDGHCF
101: PGRTDNQVKN YWNTHLSKKL GTKDPKNKPS NGDIVYQINL TNPTETLEET KIWNINDNDE IQEDRHGSNY LSSLWVHDDA FELSTLTNMM DFLDGHCF
001: MRKKVSSSGD EGNNEYKKGL WTVEEDKILM DYVKAHGKGH WNRIAKKTGL KRCGKSCRLR WMNYLSPNVK RGNFTEQEED LIIRLHKLLG NRWSLIAKRV
101: PGRTDNQVKN YWNTHLSKKL GIKDQKTKQS NGDIVYQINL PNPTETSEET KISNIVDNNN ILGDEIQEDH QGSNYLSSLW VHEDEFELST LTNMMDFIDG
201: HCF
101: PGRTDNQVKN YWNTHLSKKL GIKDQKTKQS NGDIVYQINL PNPTETSEET KISNIVDNNN ILGDEIQEDH QGSNYLSSLW VHEDEFELST LTNMMDFIDG
201: HCF
Arabidopsis Description
WERWER1 [Source:UniProtKB/TrEMBL;Acc:A0A178UJM1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.