Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | nucleus | 30.29 | 55.7 |
| GSMUA_Achr11P... | Banana | nucleus | 32.48 | 53.29 |
| GSMUA_Achr9P24180_001 | Banana | nucleus | 32.48 | 51.45 |
| GSMUA_Achr2P20600_001 | Banana | nucleus | 32.85 | 51.43 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.58 | 47.42 |
| GSMUA_Achr6P07260_001 | Banana | mitochondrion | 32.48 | 44.72 |
| GSMUA_Achr10P... | Banana | nucleus | 35.4 | 44.7 |
| GSMUA_Achr10P... | Banana | nucleus | 33.58 | 44.66 |
| GSMUA_Achr1P02420_001 | Banana | nucleus | 31.75 | 44.62 |
| GSMUA_Achr8P33900_001 | Banana | nucleus | 32.85 | 44.34 |
| GSMUA_Achr5P26000_001 | Banana | nucleus | 33.21 | 43.33 |
| GSMUA_Achr8P32480_001 | Banana | nucleus | 31.39 | 43.0 |
| GSMUA_Achr3P07950_001 | Banana | nucleus | 36.86 | 42.44 |
| GSMUA_Achr3P22200_001 | Banana | nucleus | 33.58 | 42.4 |
| GSMUA_Achr4P25710_001 | Banana | nucleus | 29.56 | 42.19 |
| GSMUA_Achr6P09620_001 | Banana | nucleus | 29.93 | 41.0 |
| Bra023486.1-P | Field mustard | nucleus | 27.74 | 40.43 |
| Bra022602.1-P | Field mustard | nucleus | 29.2 | 40.4 |
| CDY27055 | Canola | nucleus | 29.2 | 40.4 |
| GSMUA_Achr9P16040_001 | Banana | nucleus | 37.59 | 40.08 |
| GSMUA_Achr10P... | Banana | nucleus | 40.15 | 39.57 |
| CDX85583 | Canola | nucleus | 28.47 | 39.39 |
| CDX91023 | Canola | nucleus | 28.47 | 39.39 |
| GSMUA_Achr3P07940_001 | Banana | nucleus | 40.51 | 39.36 |
| AT5G52600.1 | Thale cress | nucleus | 28.83 | 39.3 |
| Bra008740.1-P | Field mustard | nucleus | 28.1 | 39.09 |
| CDX69561 | Canola | nucleus | 28.1 | 39.09 |
| CDY65324 | Canola | nucleus | 28.83 | 38.92 |
| CDY09882 | Canola | nucleus | 28.1 | 38.89 |
| GSMUA_Achr1P26520_001 | Banana | nucleus | 33.94 | 38.59 |
| GSMUA_Achr6P25420_001 | Banana | nucleus | 33.21 | 38.4 |
| GSMUA_Achr8P22690_001 | Banana | nucleus | 40.51 | 38.28 |
| GSMUA_Achr9P27380_001 | Banana | nucleus | 36.13 | 38.08 |
| AT5G14750.1 | Thale cress | nucleus | 28.1 | 37.93 |
| GSMUA_Achr11P... | Banana | nucleus | 32.48 | 37.87 |
| VIT_11s0016g05660.t01 | Wine grape | nucleus | 30.66 | 37.67 |
| CDY56151 | Canola | nucleus | 27.01 | 37.19 |
| Bra029113.1-P | Field mustard | nucleus | 27.01 | 37.19 |
| GSMUA_Achr6P04400_001 | Banana | nucleus | 37.23 | 37.09 |
| GSMUA_Achr5P17010_001 | Banana | nucleus | 32.48 | 36.93 |
| VIT_14s0066g01220.t01 | Wine grape | nucleus | 29.2 | 36.87 |
| GSMUA_Achr1P07550_001 | Banana | nucleus | 31.75 | 36.71 |
| CDY51833 | Canola | nucleus | 26.64 | 36.68 |
| VIT_17s0000g08480.t01 | Wine grape | nucleus | 28.83 | 36.57 |
| CDY66972 | Canola | nucleus | 26.64 | 36.5 |
| GSMUA_Achr2P17960_001 | Banana | nucleus | 34.31 | 36.43 |
| GSMUA_Achr4P21700_001 | Banana | nucleus | 30.66 | 36.21 |
| Solyc07g008010.2.1 | Tomato | nucleus | 27.74 | 36.02 |
| VIT_11s0016g05690.t01 | Wine grape | nucleus | 29.2 | 35.87 |
| GSMUA_Achr3P21000_001 | Banana | nucleus | 33.21 | 35.83 |
| GSMUA_Achr8P14540_001 | Banana | nucleus | 33.94 | 35.77 |
| PGSC0003DMT400079416 | Potato | nucleus | 27.74 | 35.35 |
| VIT_01s0127g00730.t01 | Wine grape | nucleus | 28.1 | 35.0 |
| GSMUA_Achr2P19380_001 | Banana | nucleus | 31.02 | 34.84 |
| CDX86461 | Canola | nucleus | 28.47 | 34.67 |
| Bra025311.1-P | Field mustard | nucleus | 28.47 | 34.67 |
| GSMUA_Achr7P18550_001 | Banana | nucleus | 33.21 | 34.47 |
| AT3G27920.1 | Thale cress | nucleus | 28.47 | 34.21 |
| AT5G40330.1 | Thale cress | nucleus | 27.01 | 33.79 |
| Bra039065.1-P | Field mustard | nucleus | 24.45 | 33.67 |
| GSMUA_Achr7P18560_001 | Banana | nucleus | 32.48 | 33.09 |
| GSMUA_Achr9P08600_001 | Banana | nucleus | 32.48 | 32.72 |
| GSMUA_Achr6P12930_001 | Banana | nucleus | 33.21 | 31.82 |
| GSMUA_Achr6P14840_001 | Banana | nucleus | 33.21 | 31.38 |
| GSMUA_Achr5P01180_001 | Banana | nucleus | 29.56 | 31.15 |
| GSMUA_Achr10P... | Banana | nucleus | 32.12 | 30.99 |
| GSMUA_Achr10P... | Banana | nucleus | 32.48 | 29.87 |
| Bra025589.1-P | Field mustard | nucleus | 27.74 | 29.8 |
| CDY44571 | Canola | nucleus | 27.74 | 29.8 |
| GSMUA_Achr7P13700_001 | Banana | nucleus | 32.12 | 28.66 |
| GSMUA_AchrUn_... | Banana | nucleus | 32.85 | 28.12 |
| GSMUA_Achr5P21250_001 | Banana | nucleus | 32.12 | 27.41 |
| GSMUA_Achr6P02530_001 | Banana | nucleus | 32.85 | 24.93 |
| GSMUA_Achr8P10470_001 | Banana | nucleus | 33.21 | 24.53 |
| GSMUA_Achr5P06530_001 | Banana | nucleus | 33.21 | 24.27 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P27700_001 | EnsemblPlants:GSMUA_Achr3T27700_001 | EnsemblPlantsGene:GSMUA_Achr3G27700_001 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF459 | PFAM:PF00249 | PFscan:PS51294 | SMART:SM00717 | SUPFAM:SSF46689 |
| UniParc:UPI0002966A5C | UniProt:M0SID6 | MapMan:15.5.2.1 | : | : | : |
Description
myb-like DNA-binding domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G27700_001]
Coordinates
chr3:+:27206568..27208631
Molecular Weight (calculated)
30714.2 Da
IEP (calculated)
8.383
GRAVY (calculated)
-0.561
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKASCCPKE GLNRGAWTSE EDKLLSDYIL AHGLGRWRSL PANAGLNRCG KSCRLRWLNY LRPDIKKGNI TQEEEDLIIR LHNLLGNRWS LIAGRLPGRT
101: DNEIKNYWNT YLRKKGLHSS PSPASKNREV QTVKAVADKQ KGVEVNVIRT KAIRCTRSLF ADEVPASGMN NSAYSVLPSA MFDYDTSDFS GNDPAPQAAK
201: SVCSEENMQN SVFPQAADGF YRSSGSFHDS FSATASSSYF NYTKICSTVL EKSEELHPFM CDDEWVSLLM HPNI
101: DNEIKNYWNT YLRKKGLHSS PSPASKNREV QTVKAVADKQ KGVEVNVIRT KAIRCTRSLF ADEVPASGMN NSAYSVLPSA MFDYDTSDFS GNDPAPQAAK
201: SVCSEENMQN SVFPQAADGF YRSSGSFHDS FSATASSSYF NYTKICSTVL EKSEELHPFM CDDEWVSLLM HPNI
001: MGKRATTSVR REELNRGAWT DHEDKILRDY ITTHGEGKWS TLPNQAGLKR CGKSCRLRWK NYLRPGIKRG NISSDEEELI IRLHNLLGNR WSLIAGRLPG
101: RTDNEIKNHW NSNLRKRLPK TQTKQPKRIK HSTNNENNVC VIRTKAIRCS KTLLFSDLSL QKKSSTSPLP LKEQEMDQGG SSLMGDLEFD FDRIHSEFHF
201: PDLMDFDGLD CGNVTSLVSS NEILGELVPA QGNLDLNRPF TSCHHRGDDE DWLRDFTC
101: RTDNEIKNHW NSNLRKRLPK TQTKQPKRIK HSTNNENNVC VIRTKAIRCS KTLLFSDLSL QKKSSTSPLP LKEQEMDQGG SSLMGDLEFD FDRIHSEFHF
201: PDLMDFDGLD CGNVTSLVSS NEILGELVPA QGNLDLNRPF TSCHHRGDDE DWLRDFTC
Arabidopsis Description
TT2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT5G35550]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.