Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P16040_001 | Banana | nucleus | 65.25 | 71.6 |
| GSMUA_Achr8P22690_001 | Banana | nucleus | 68.09 | 66.21 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.43 | 55.7 |
| VIT_11s0016g01310.t01 | Wine grape | nucleus | 39.72 | 50.91 |
| GSMUA_Achr11P... | Banana | nucleus | 30.14 | 50.9 |
| GSMUA_Achr9P24180_001 | Banana | nucleus | 30.14 | 49.13 |
| GSMUA_Achr2P20600_001 | Banana | nucleus | 29.79 | 48.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 32.27 | 46.91 |
| GSMUA_Achr9P27380_001 | Banana | nucleus | 41.84 | 45.38 |
| GSMUA_Achr6P04400_001 | Banana | nucleus | 43.97 | 45.09 |
| GSMUA_Achr10P... | Banana | nucleus | 43.97 | 44.6 |
| GSMUA_Achr8P33900_001 | Banana | nucleus | 31.91 | 44.34 |
| GSMUA_Achr1P02420_001 | Banana | nucleus | 30.5 | 44.1 |
| GSMUA_Achr3P07950_001 | Banana | nucleus | 36.88 | 43.7 |
| GSMUA_Achr10P... | Banana | nucleus | 31.91 | 43.69 |
| GSMUA_Achr8P32480_001 | Banana | nucleus | 30.85 | 43.5 |
| GSMUA_Achr6P07260_001 | Banana | mitochondrion | 30.5 | 43.22 |
| GSMUA_Achr5P26000_001 | Banana | nucleus | 30.85 | 41.43 |
| VIT_11s0016g01320.t01 | Wine grape | nucleus | 41.49 | 41.2 |
| GSMUA_Achr10P... | Banana | nucleus | 31.56 | 41.01 |
| GSMUA_Achr3P22200_001 | Banana | nucleus | 31.56 | 41.01 |
| GSMUA_Achr4P25710_001 | Banana | nucleus | 27.66 | 40.62 |
| GSMUA_Achr3P27700_001 | Banana | nucleus | 39.36 | 40.51 |
| GSMUA_Achr6P09620_001 | Banana | nucleus | 28.72 | 40.5 |
| GSMUA_Achr5P17010_001 | Banana | nucleus | 32.98 | 38.59 |
| GSMUA_Achr1P26520_001 | Banana | nucleus | 32.62 | 38.17 |
| GSMUA_Achr6P25420_001 | Banana | nucleus | 31.21 | 37.13 |
| GSMUA_Achr1P07550_001 | Banana | nucleus | 31.21 | 37.13 |
| GSMUA_Achr7P18550_001 | Banana | nucleus | 33.69 | 35.98 |
| GSMUA_Achr3P21000_001 | Banana | nucleus | 31.91 | 35.43 |
| GSMUA_Achr4P21700_001 | Banana | nucleus | 29.08 | 35.34 |
| GSMUA_Achr11P... | Banana | nucleus | 29.43 | 35.32 |
| GSMUA_Achr7P18560_001 | Banana | nucleus | 32.27 | 33.83 |
| GSMUA_Achr2P19380_001 | Banana | nucleus | 29.08 | 33.61 |
| GSMUA_Achr2P17960_001 | Banana | nucleus | 30.14 | 32.95 |
| GSMUA_Achr5P01180_001 | Banana | nucleus | 30.14 | 32.69 |
| GSMUA_Achr9P08600_001 | Banana | nucleus | 31.21 | 32.35 |
| GSMUA_Achr8P14540_001 | Banana | nucleus | 28.72 | 31.15 |
| GSMUA_Achr6P12930_001 | Banana | nucleus | 31.56 | 31.12 |
| GSMUA_Achr6P14840_001 | Banana | nucleus | 31.21 | 30.34 |
| GSMUA_Achr5P21250_001 | Banana | nucleus | 34.04 | 29.91 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.69 | 29.69 |
| GSMUA_Achr7P13700_001 | Banana | nucleus | 32.27 | 29.64 |
| GSMUA_Achr10P... | Banana | nucleus | 31.21 | 29.53 |
| GSMUA_Achr10P... | Banana | nucleus | 28.01 | 27.82 |
| GSMUA_Achr8P10470_001 | Banana | nucleus | 33.33 | 25.34 |
| GSMUA_Achr6P02530_001 | Banana | nucleus | 32.27 | 25.21 |
| GSMUA_Achr5P06530_001 | Banana | nucleus | 31.56 | 23.73 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P07940_001 | EnsemblPlants:GSMUA_Achr3T07940_001 | EnsemblPlantsGene:GSMUA_Achr3G07940_001 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF459 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI0002949655 | UniProt:M0SCR1 | MapMan:15.5.2.1 | : | : |
Description
Whole genome shotgun sequence of line PN40024, scaffold_16.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr3G07940_001]
Coordinates
chr3:-:5521762..5522767
Molecular Weight (calculated)
31817.2 Da
IEP (calculated)
4.747
GRAVY (calculated)
-0.810
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRRPCCSKE GLNRGAWSAR EDNILVDYIR THGEGKWRDL PKRAGLKRCG KSCRLRWLNY LRPDIKRGNI TQDEEDLIIK LHALLGNRWS LIAGRLPGRT
101: DNEIKNYWNT NLSKKTMPPL CTKGSSKEKE EKKVGSSEEL KAAGEQLPAH VIQTKAVRCT KVYLPSPRDD PLTTGPSSEL THGESPSSSV PRDADPASFL
201: EDFDMDEFMS SFQEDGLLQL CVDEAHEDAN YAREDADDDS LWFCDPMQMD LSDGNSCTES QVAAEVERLT YLIDCEEEAQ DK
101: DNEIKNYWNT NLSKKTMPPL CTKGSSKEKE EKKVGSSEEL KAAGEQLPAH VIQTKAVRCT KVYLPSPRDD PLTTGPSSEL THGESPSSSV PRDADPASFL
201: EDFDMDEFMS SFQEDGLLQL CVDEAHEDAN YAREDADDDS LWFCDPMQMD LSDGNSCTES QVAAEVERLT YLIDCEEEAQ DK
001: MGKRATTSVR REELNRGAWT DHEDKILRDY ITTHGEGKWS TLPNQAGLKR CGKSCRLRWK NYLRPGIKRG NISSDEEELI IRLHNLLGNR WSLIAGRLPG
101: RTDNEIKNHW NSNLRKRLPK TQTKQPKRIK HSTNNENNVC VIRTKAIRCS KTLLFSDLSL QKKSSTSPLP LKEQEMDQGG SSLMGDLEFD FDRIHSEFHF
201: PDLMDFDGLD CGNVTSLVSS NEILGELVPA QGNLDLNRPF TSCHHRGDDE DWLRDFTC
101: RTDNEIKNHW NSNLRKRLPK TQTKQPKRIK HSTNNENNVC VIRTKAIRCS KTLLFSDLSL QKKSSTSPLP LKEQEMDQGG SSLMGDLEFD FDRIHSEFHF
201: PDLMDFDGLD CGNVTSLVSS NEILGELVPA QGNLDLNRPF TSCHHRGDDE DWLRDFTC
Arabidopsis Description
TT2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT5G35550]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.