Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr3P17620_001 | |
| GSMUA_Achr6P21490_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G38620.1 | GSMUA_Achr3P17620_001 | AT4G09820.1 | 15361138 |
| AT4G38620.1 | GSMUA_Achr6P21490_001 | AT4G09820.1 | 15361138 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | nucleus | 51.56 | 66.44 |
| GSMUA_Achr11P... | Banana | nucleus | 53.65 | 61.68 |
| GSMUA_Achr9P24180_001 | Banana | nucleus | 53.65 | 59.54 |
| GSMUA_Achr2P20600_001 | Banana | nucleus | 52.08 | 57.14 |
| GSMUA_Achr1P02420_001 | Banana | nucleus | 55.21 | 54.36 |
| GSMUA_Achr8P33900_001 | Banana | nucleus | 55.73 | 52.71 |
| GSMUA_Achr6P07260_001 | Banana | mitochondrion | 53.12 | 51.26 |
| GSMUA_Achr8P32480_001 | Banana | nucleus | 51.56 | 49.5 |
| GSMUA_Achr5P26000_001 | Banana | nucleus | 53.12 | 48.57 |
| GSMUA_Achr3P22200_001 | Banana | nucleus | 54.69 | 48.39 |
| GSMUA_Achr10P... | Banana | nucleus | 53.12 | 47.0 |
| GSMUA_Achr1P07550_001 | Banana | nucleus | 57.81 | 46.84 |
| GSMUA_Achr1P26520_001 | Banana | nucleus | 57.29 | 45.64 |
| TraesCS7D01G272400.1 | Wheat | nucleus | 55.21 | 45.3 |
| TraesCS7B01G169900.1 | Wheat | nucleus | 55.21 | 45.11 |
| GSMUA_AchrUn_... | Banana | nucleus | 45.31 | 44.85 |
| HORVU7Hr1G057410.1 | Barley | nucleus | 55.21 | 44.54 |
| GSMUA_Achr6P25420_001 | Banana | nucleus | 54.69 | 44.3 |
| TraesCS7A01G272100.1 | Wheat | nucleus | 55.21 | 44.17 |
| GSMUA_Achr10P... | Banana | nucleus | 46.88 | 43.69 |
| PGSC0003DMT400015803 | Potato | nucleus | 56.77 | 42.91 |
| Zm00001d032024_P001 | Maize | nucleus | 56.77 | 42.91 |
| Solyc01g111500.2.1 | Tomato | nucleus | 56.25 | 42.86 |
| EES14116 | Sorghum | nucleus | 56.25 | 41.86 |
| GSMUA_Achr5P01180_001 | Banana | nucleus | 56.25 | 41.54 |
| Zm00001d053220_P001 | Maize | nucleus | 55.73 | 41.15 |
| GSMUA_Achr5P17010_001 | Banana | nucleus | 51.04 | 40.66 |
| Solyc10g055410.1.1 | Tomato | nucleus | 56.77 | 39.93 |
| PGSC0003DMT400034372 | Potato | nucleus | 55.73 | 39.93 |
| Zm00001d006236_P002 | Maize | nucleus | 56.25 | 39.56 |
| GSMUA_Achr9P08600_001 | Banana | nucleus | 54.69 | 38.6 |
| GSMUA_Achr6P09620_001 | Banana | nucleus | 39.58 | 38.0 |
| Bra010736.1-P | Field mustard | nucleus | 55.21 | 37.46 |
| CDX90285 | Canola | nucleus | 55.21 | 37.46 |
| GSMUA_Achr6P12930_001 | Banana | nucleus | 55.73 | 37.41 |
| GSMUA_Achr10P... | Banana | nucleus | 54.69 | 36.97 |
| AT4G38620.1 | Thale cress | nucleus | 54.17 | 36.88 |
| Bra033572.1-P | Field mustard | nucleus | 55.73 | 36.39 |
| CDX72743 | Canola | nucleus | 55.73 | 36.39 |
| CDY22416 | Canola | nucleus | 55.73 | 36.39 |
| CDY52797 | Canola | nucleus | 46.88 | 34.88 |
| CDY12092 | Canola | nucleus | 55.21 | 34.87 |
| GSMUA_Achr3P21000_001 | Banana | nucleus | 45.83 | 34.65 |
| GSMUA_Achr3P07950_001 | Banana | nucleus | 41.15 | 33.19 |
| GSMUA_Achr9P27380_001 | Banana | nucleus | 41.67 | 30.77 |
| GSMUA_Achr2P19380_001 | Banana | nucleus | 38.54 | 30.33 |
| GSMUA_Achr11P... | Banana | nucleus | 36.98 | 30.21 |
| GSMUA_Achr6P04400_001 | Banana | nucleus | 43.23 | 30.18 |
| GSMUA_Achr4P21700_001 | Banana | nucleus | 36.46 | 30.17 |
| GSMUA_Achr3P27700_001 | Banana | nucleus | 42.19 | 29.56 |
| GSMUA_Achr8P14540_001 | Banana | nucleus | 39.58 | 29.23 |
| GSMUA_Achr9P16040_001 | Banana | nucleus | 39.06 | 29.18 |
| GSMUA_Achr2P17960_001 | Banana | nucleus | 39.06 | 29.07 |
| GSMUA_Achr3P07940_001 | Banana | nucleus | 40.62 | 27.66 |
| GSMUA_Achr7P18550_001 | Banana | nucleus | 38.02 | 27.65 |
| GSMUA_Achr10P... | Banana | nucleus | 39.58 | 27.34 |
| GSMUA_Achr10P... | Banana | nucleus | 41.67 | 26.85 |
| GSMUA_Achr7P18560_001 | Banana | nucleus | 37.5 | 26.77 |
| GSMUA_Achr8P22690_001 | Banana | nucleus | 40.1 | 26.55 |
| GSMUA_Achr6P14840_001 | Banana | nucleus | 39.58 | 26.21 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.71 | 25.62 |
| GSMUA_Achr7P13700_001 | Banana | nucleus | 40.62 | 25.41 |
| GSMUA_Achr5P21250_001 | Banana | nucleus | 41.67 | 24.92 |
| GSMUA_Achr8P10470_001 | Banana | nucleus | 43.23 | 22.37 |
| GSMUA_Achr5P06530_001 | Banana | nucleus | 42.71 | 21.87 |
| GSMUA_Achr6P02530_001 | Banana | nucleus | 36.46 | 19.39 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| EnsemblPlantsGene:GSMUA_Achr4G25710_001 | EnsemblPlants:GSMUA_Achr4P25710_001 | EnsemblPlants:GSMUA_Achr4T25710_001 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:M0SS32 |
| InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF741 | InterPro:SANT/Myb |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI000295439B | SEG:seg | : | : |
Description
Myb-related protein Zm38 [Source:GMGC_GENE;Acc:GSMUA_Achr4G25710_001]
Coordinates
chr4:+:25131531..25132175
Molecular Weight (calculated)
22123.7 Da
IEP (calculated)
10.569
GRAVY (calculated)
-0.682
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAMVRSPCC EKAHIKRGAW TREEDHLLIA YIRAHGEGCW RSLPMAAGLL RCGKSCRLRW NNYLRPGLRR GIFTMKEDEL IIKLHSRLSN RQAVAAWSLI
101: AARLPGRTDN EIKNHWNTHV RRKLLSRGTD PATHRRLIHE EKDTGRLLPY KQEKISSSSS SSSNREGLWN IQDYRCPYLN LDLCLSPPSQ KP
101: AARLPGRTDN EIKNHWNTHV RRKLLSRGTD PATHRRLIHE EKDTGRLLPY KQEKISSSSS SSSNREGLWN IQDYRCPYLN LDLCLSPPSQ KP
001: MGRSPCCEKA HMNKGAWTKE EDQLLVDYIR KHGEGCWRSL PRAAGLQRCG KSCRLRWMNY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLSRG IDPNSHRLIN ESVVSPSSLQ NDVVETIHLD FSGPVKPEPV REEIGMVNNC ESSGTTSEKD YGNEEDWVLN LELSVGPSYR
201: YESTRKVSVV DSAESTRRWG SELFGAHESD AVCLCCRIGL FRNESCRNCR VSDVRTH
101: DNEIKNYWNT HIKRKLLSRG IDPNSHRLIN ESVVSPSSLQ NDVVETIHLD FSGPVKPEPV REEIGMVNNC ESSGTTSEKD YGNEEDWVLN LELSVGPSYR
201: YESTRKVSVV DSAESTRRWG SELFGAHESD AVCLCCRIGL FRNESCRNCR VSDVRTH
Arabidopsis Description
MYB3MYB3 [Source:UniProtKB/TrEMBL;Acc:A0A178WFN1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.