Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G38620.1 | CDX86891 | AT4G09820.1 | 15361138 |
| AT4G38620.1 | CDX99505 | AT4G09820.1 | 15361138 |
| AT4G38620.1 | CDY65427 | AT4G25920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90285 | Canola | nucleus | 90.7 | 82.69 |
| CDY12092 | Canola | nucleus | 93.02 | 78.95 |
| AT4G38620.1 | Thale cress | nucleus | 80.62 | 73.76 |
| CDX72743 | Canola | nucleus | 82.17 | 72.11 |
| CDY22416 | Canola | nucleus | 82.17 | 72.11 |
| GSMUA_Achr11P... | Banana | nucleus | 43.02 | 66.47 |
| GSMUA_Achr9P24180_001 | Banana | nucleus | 43.02 | 64.16 |
| GSMUA_Achr8P33900_001 | Banana | nucleus | 49.22 | 62.56 |
| Zm00001d022628_P001 | Maize | nucleus | 51.55 | 61.01 |
| KRH60702 | Soybean | nucleus | 48.84 | 60.0 |
| GSMUA_Achr1P02420_001 | Banana | nucleus | 44.19 | 58.46 |
| VIT_04s0023g03710.t01 | Wine grape | nucleus | 52.71 | 56.2 |
| KRH51400 | Soybean | nucleus | 50.78 | 55.74 |
| KRH29280 | Soybean | nucleus | 52.33 | 54.88 |
| Os09t0538400-01 | Rice | extracellular | 53.1 | 54.58 |
| Solyc01g111500.2.1 | Tomato | nucleus | 53.1 | 54.37 |
| GSMUA_Achr1P07550_001 | Banana | nucleus | 49.22 | 53.59 |
| PGSC0003DMT400015803 | Potato | nucleus | 52.71 | 53.54 |
| TraesCS7D01G272400.1 | Wheat | nucleus | 48.45 | 53.42 |
| TraesCS7B01G169900.1 | Wheat | nucleus | 48.45 | 53.19 |
| KRH24301 | Soybean | nucleus | 51.94 | 52.96 |
| HORVU7Hr1G057410.1 | Barley | nucleus | 48.06 | 52.1 |
| TraesCS7A01G272100.1 | Wheat | nucleus | 48.45 | 52.08 |
| GSMUA_Achr1P26520_001 | Banana | nucleus | 48.06 | 51.45 |
| EER99264 | Sorghum | nucleus | 52.33 | 51.14 |
| PGSC0003DMT400034372 | Potato | nucleus | 52.71 | 50.75 |
| Solyc10g055410.1.1 | Tomato | nucleus | 53.49 | 50.55 |
| TraesCS5B01G330100.1 | Wheat | nucleus | 51.16 | 50.19 |
| TraesCS5D01G335700.1 | Wheat | nucleus | 51.55 | 50.0 |
| TraesCS5A01G329900.1 | Wheat | nucleus | 51.55 | 49.63 |
| EES14116 | Sorghum | nucleus | 49.61 | 49.61 |
| Zm00001d006236_P002 | Maize | nucleus | 51.94 | 49.08 |
| Zm00001d032024_P001 | Maize | nucleus | 48.06 | 48.82 |
| CDX72510 | Canola | nucleus | 51.16 | 48.71 |
| HORVU5Hr1G083910.2 | Barley | nucleus | 50.78 | 48.7 |
| CDX91687 | Canola | nucleus | 42.25 | 48.44 |
| CDX75478 | Canola | nucleus | 53.88 | 48.43 |
| CDY40652 | Canola | nucleus | 50.78 | 48.34 |
| Zm00001d053220_P001 | Maize | nucleus | 48.45 | 48.08 |
| CDX69102 | Canola | nucleus | 53.1 | 47.9 |
| CDX90721 | Canola | nucleus | 40.7 | 46.88 |
| GSMUA_Achr4P25710_001 | Banana | nucleus | 34.88 | 46.88 |
| CDY05057 | Canola | nucleus | 40.31 | 45.81 |
| CDY72116 | Canola | nucleus | 50.78 | 45.64 |
| CDY02243 | Canola | nucleus | 50.78 | 45.64 |
| CDY04798 | Canola | nucleus | 46.12 | 44.24 |
| CDY21378 | Canola | nucleus | 45.74 | 43.87 |
| CDY25747 | Canola | nucleus | 43.41 | 42.42 |
| CDY12520 | Canola | nucleus | 43.41 | 41.18 |
| CDY27055 | Canola | nucleus | 27.13 | 35.35 |
| CDX69561 | Canola | nucleus | 26.36 | 34.52 |
| CDY65324 | Canola | nucleus | 27.13 | 34.48 |
| CDY09882 | Canola | nucleus | 25.97 | 33.84 |
| CDX85583 | Canola | nucleus | 25.58 | 33.33 |
| CDX91023 | Canola | nucleus | 25.58 | 33.33 |
| CDY56151 | Canola | nucleus | 24.81 | 32.16 |
| CDY51833 | Canola | nucleus | 24.81 | 32.16 |
| CDY07085 | Canola | nucleus | 30.23 | 31.08 |
| CDY23616 | Canola | nucleus | 27.13 | 30.7 |
| CDY24177 | Canola | nucleus | 29.84 | 30.68 |
| CDY59254 | Canola | nucleus | 29.07 | 29.41 |
| CDY49363 | Canola | nucleus | 29.07 | 28.74 |
| CDX84119 | Canola | nucleus | 29.07 | 28.74 |
| CDY66972 | Canola | nucleus | 22.09 | 28.5 |
| CDX86461 | Canola | nucleus | 23.64 | 27.11 |
| CDY44571 | Canola | nucleus | 24.03 | 24.31 |
| CDX83327 | Canola | nucleus | 32.56 | 23.86 |
| CDY05636 | Canola | nucleus | 26.74 | 23.79 |
| CDX95725 | Canola | nucleus | 32.17 | 23.51 |
| CDY00035 | Canola | nucleus | 28.68 | 22.42 |
| CDY49609 | Canola | nucleus | 28.68 | 21.2 |
| CDX85403 | Canola | nucleus | 27.91 | 21.05 |
| CDX86237 | Canola | nucleus | 27.91 | 20.99 |
| CDY55384 | Canola | nucleus | 23.64 | 20.68 |
| CDX80105 | Canola | nucleus | 24.03 | 18.96 |
| CDY27486 | Canola | plastid | 5.43 | 5.93 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078IS44 | UniProt:A0A078IS44 | EnsemblPlants:CDY52797 | ProteinID:CDY52797 |
| ProteinID:CDY52797.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00007862001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017877 | InterPro:IPR017930 | InterPro:Myb-like_dom | InterPro:Myb_dom | PFAM:PF00249 |
| PFscan:PS50090 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF741 | InterPro:SANT/Myb | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI0004EE5DB3 | SEG:seg | : | : | : |
Description
BnaCnng23360DBnaCnng23360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IS44]
Coordinates
chrLK033132:-:4516..5482
Molecular Weight (calculated)
29578.4 Da
IEP (calculated)
8.354
GRAVY (calculated)
-0.665
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRSPCCEKA HTNKGAWTKE EDERLIAYIK AHGEDCCCRL RWINYLRPDL KRGNFTEDED ELIIKLHSLL GNKWSLIAGR LPGRTDNEIK NYWNTHIRRK
101: LINRGIDPTT HRPVQESSSA SQDSKPTQLA EAITSNNTIN ISFTNTPKME STSCFQVKPE KISMLTFKEE KDEFLIEEKL PDLNLELRIS LPDVVEGKST
201: RERCFKCSLG MINGMECRCG SMRCDVVGGS SGSTGKGREN SILRFWQETS ILRFWRKI
101: LINRGIDPTT HRPVQESSSA SQDSKPTQLA EAITSNNTIN ISFTNTPKME STSCFQVKPE KISMLTFKEE KDEFLIEEKL PDLNLELRIS LPDVVEGKST
201: RERCFKCSLG MINGMECRCG SMRCDVVGGS SGSTGKGREN SILRFWQETS ILRFWRKI
001: MGRSPCCEKA HTNKGAWTKE EDERLVAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIRRKLINRG IDPTSHRPIQ ESSASQDSKP TQLEPVTSNT INISFTSAPK VETFHESISF PGKSEKISML TFKEEKDECP VQEKFPDLNL
201: ELRISLPDDV DRLQGHGKST TPRCFKCSLG MINGMECRCG RMRCDVVGGS SKGSDMSNGF DFLGLAKKET TSLLGFRSLE MK
101: DNEIKNYWNT HIRRKLINRG IDPTSHRPIQ ESSASQDSKP TQLEPVTSNT INISFTSAPK VETFHESISF PGKSEKISML TFKEEKDECP VQEKFPDLNL
201: ELRISLPDDV DRLQGHGKST TPRCFKCSLG MINGMECRCG RMRCDVVGGS SKGSDMSNGF DFLGLAKKET TSLLGFRSLE MK
Arabidopsis Description
MYB4Transcription repressor MYB4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZP1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.