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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra036145.1-P Field mustard nucleus 96.36 91.64
CDY49609 Canola nucleus 96.06 90.83
CDX86237 Canola nucleus 80.91 77.84
CDX85403 Canola nucleus 80.3 77.49
CDY05636 Canola nucleus 66.06 75.17
AT5G49330.1 Thale cress nucleus 77.58 74.85
CDX90721 Canola nucleus 27.88 41.07
CDX91687 Canola nucleus 27.58 40.44
CDY05057 Canola nucleus 27.58 40.09
PGSC0003DMT400011167 Potato nucleus 32.42 39.63
Solyc06g009710.2.1 Tomato nucleus 33.64 37.37
CDX91023 Canola nucleus 22.42 37.37
CDX85583 Canola nucleus 22.42 37.37
CDX69561 Canola nucleus 22.12 37.06
GSMUA_AchrUn_... Banana nucleus 35.45 36.56
CDY09882 Canola nucleus 21.82 36.36
PGSC0003DMT400018841 Potato nucleus 33.33 36.3
Solyc12g049350.1.1 Tomato nucleus 32.12 36.18
CDY55384 Canola nucleus 31.52 35.25
Solyc01g079620.2.1 Tomato nucleus 36.06 35.21
VIT_07s0005g01210.t01 Wine grape nucleus 38.79 34.88
CDY27055 Canola nucleus 20.61 34.34
CDY40652 Canola nucleus 28.18 34.32
CDX72510 Canola nucleus 28.18 34.32
CDY04798 Canola nucleus 27.88 34.2
CDY21378 Canola nucleus 27.88 34.2
CDY07085 Canola nucleus 25.76 33.86
CDY24177 Canola nucleus 25.76 33.86
CDY23616 Canola nucleus 23.33 33.77
CDY25747 Canola nucleus 26.97 33.71
CDY65324 Canola nucleus 20.61 33.5
GSMUA_Achr8P10470_001 Banana nucleus 37.58 33.42
PGSC0003DMT400023322 Potato nucleus 36.67 33.33
CDX80105 Canola nucleus 32.73 33.03
CDY12520 Canola nucleus 26.97 32.72
CDX90285 Canola nucleus 27.88 32.51
CDX69102 Canola nucleus 27.88 32.17
CDY56151 Canola nucleus 19.39 32.16
CDX83327 Canola nucleus 34.24 32.1
CDX75478 Canola nucleus 27.88 32.06
GSMUA_Achr5P21250_001 Banana nucleus 30.91 31.78
CDX95725 Canola nucleus 33.94 31.73
CDY51833 Canola nucleus 19.09 31.66
CDY66972 Canola nucleus 18.79 31.0
CDY59254 Canola nucleus 23.94 30.98
CDY22416 Canola nucleus 27.58 30.95
CDX72743 Canola nucleus 27.58 30.95
CDY72116 Canola nucleus 26.36 30.31
CDY02243 Canola nucleus 26.36 30.31
CDY12092 Canola nucleus 27.58 29.93
CDX84119 Canola nucleus 23.64 29.89
CDX86461 Canola nucleus 20.3 29.78
CDY49363 Canola nucleus 23.03 29.12
CDY52797 Canola nucleus 22.42 28.68
CDY44571 Canola nucleus 20.61 26.67
CDY27486 Canola plastid 6.67 9.32
Protein Annotations
EnsemblPlants:CDY00035EnsemblPlantsGene:GSBRNA2T00109519001Gene3D:1.10.10.60GO:A0A078ED87GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0005488InterPro:Homeobox-like_sfInterPro:IPR017930InterPro:Myb_domInterPro:SANT/Myb
PANTHER:PTHR10641PANTHER:PTHR10641:SF203PFAM:PF00249PFscan:PS51294ProteinID:CDY00035ProteinID:CDY00035.1
SEG:segSMART:SM00717SUPFAM:SSF46689UniParc:UPI0004EF1165MapMan:15.5.2.1:
Description
BnaC09g02660D
Coordinates
chrLK031916:+:370331..373373
Molecular Weight (calculated)
37414.6 Da
IEP (calculated)
5.966
GRAVY (calculated)
-0.860
Length
330 amino acids
Sequence
(BLAST)
001: MGRAPCCEKI GLKRGRWTAE EDETLTNYIQ INGEGSWRSL PKKAGLLRCG KSCRLRWINY LRMDLKRGNI TAEEDDTIVK LHSLLGNRWS LIATHLPGRT
101: DNEIKNYWNS HLSRKIYAFT SVRRDEHGPN INDFVLNKSS SSSSCSSSDA KNTNKTKKKK GRTSRSCMKK HKQMVTASQC FPQPKELESE VSEEGKNGNF
201: EGKALEPYEW LDGEIGRLMS SFVWECTSEE VVNEVNDNDS GQNKVCESGD NSSCYVRLFE EEHGKLGNLE VDHDMNVKKE REGSGLSSNS YENGDKDWWV
301: GLCDSLEVGF GIDDELLGWE FQSSVPLDRT
Best Arabidopsis Sequence Match ( AT5G49330.1 )
(BLAST)
001: MGRAPCCEKI GLKRGRWTAE EDEILTKYIQ TNGEGSWRSL PKKAGLLRCG KSCRLRWINY LRRDLKRGNI TSDEEEIIVK LHSLLGNRWS LIATHLPGRT
101: DNEIKNYWNS HLSRKIYAFT AVSGDGHNLL VNDVVLKKSC SSSSGAKNNN KTKKKKKGRT SRSSMKKHKQ MVTASQCFSQ PKELESDFSE GGQNGNFEGE
201: SLGPYEWLDG ELERLLSSCV WECTSEEAVI GVNDEKVCES GDNSSCCVNL FEEEQGSETK IGHVGITEVD HDMTVERERE GSFLSSNSNE NNDKDWWVGL
301: CNSSEVGFGV DEELLDWEFQ GNVTCQSDDL WDLSDIGEIT LE
Arabidopsis Description
MYB111Transcription factor MYB111 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJ07]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.