Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86461 | Canola | nucleus | 87.5 | 77.78 |
| CDX91023 | Canola | nucleus | 51.0 | 51.52 |
| CDX85583 | Canola | nucleus | 51.0 | 51.52 |
| CDX69561 | Canola | nucleus | 50.5 | 51.27 |
| CDY09882 | Canola | nucleus | 50.5 | 51.01 |
| VIT_14s0066g01220.t01 | Wine grape | nucleus | 49.0 | 45.16 |
| CDY44571 | Canola | nucleus | 56.0 | 43.92 |
| CDY27055 | Canola | nucleus | 37.5 | 37.88 |
| CDY65324 | Canola | nucleus | 37.5 | 36.95 |
| CDY56151 | Canola | nucleus | 35.5 | 35.68 |
| CDY51833 | Canola | nucleus | 35.0 | 35.18 |
| CDY23616 | Canola | nucleus | 35.5 | 31.14 |
| GSMUA_Achr3P07950_001 | Banana | nucleus | 36.0 | 30.25 |
| CDY07085 | Canola | nucleus | 37.5 | 29.88 |
| CDY24177 | Canola | nucleus | 36.5 | 29.08 |
| CDX91687 | Canola | nucleus | 32.5 | 28.89 |
| CDY59254 | Canola | nucleus | 36.5 | 28.63 |
| CDY05057 | Canola | nucleus | 32.0 | 28.19 |
| CDX90721 | Canola | nucleus | 31.5 | 28.12 |
| GSMUA_Achr3P27700_001 | Banana | nucleus | 36.5 | 26.64 |
| CDY49363 | Canola | nucleus | 33.5 | 25.67 |
| CDX84119 | Canola | nucleus | 33.5 | 25.67 |
| CDY25747 | Canola | nucleus | 33.0 | 25.0 |
| CDY04798 | Canola | nucleus | 33.0 | 24.54 |
| CDX72510 | Canola | nucleus | 33.0 | 24.35 |
| CDY40652 | Canola | nucleus | 33.0 | 24.35 |
| CDY21378 | Canola | nucleus | 32.5 | 24.16 |
| CDY12520 | Canola | nucleus | 32.5 | 23.9 |
| CDX69102 | Canola | nucleus | 33.5 | 23.43 |
| CDX90285 | Canola | nucleus | 33.0 | 23.32 |
| CDY22416 | Canola | nucleus | 34.0 | 23.13 |
| CDX72743 | Canola | nucleus | 34.0 | 23.13 |
| CDX75478 | Canola | nucleus | 33.0 | 23.0 |
| CDY05636 | Canola | nucleus | 32.5 | 22.41 |
| CDY02243 | Canola | nucleus | 32.0 | 22.3 |
| CDY72116 | Canola | nucleus | 32.0 | 22.3 |
| CDY52797 | Canola | nucleus | 28.5 | 22.09 |
| CDY12092 | Canola | nucleus | 33.0 | 21.71 |
| CDY00035 | Canola | nucleus | 31.0 | 18.79 |
| CDX83327 | Canola | nucleus | 32.5 | 18.47 |
| CDX86237 | Canola | nucleus | 31.5 | 18.37 |
| CDX95725 | Canola | nucleus | 32.0 | 18.13 |
| CDX85403 | Canola | nucleus | 31.0 | 18.13 |
| CDY49609 | Canola | nucleus | 31.0 | 17.77 |
| CDY55384 | Canola | nucleus | 21.5 | 14.58 |
| CDX80105 | Canola | nucleus | 21.5 | 13.15 |
| CDY27486 | Canola | plastid | 2.0 | 1.69 |
Protein Annotations
| EnsemblPlants:CDY66972 | EnsemblPlantsGene:GSBRNA2T00057746001 | Gene3D:1.10.10.60 | GO:A0A078JNM2 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF625 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDY66972 | ProteinID:CDY66972.1 |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EF0764 | UniProt:A0A078JNM2 | MapMan:15.5.2.1 | : |
Description
BnaCnng52970DBnaCnng52970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JNM2]
Coordinates
chrLK035629:+:10522..12100
Molecular Weight (calculated)
22929.1 Da
IEP (calculated)
10.070
GRAVY (calculated)
-0.912
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTRRRTEEE NHQEYKKGLW TVEEDSILRD YVLTHGKGQW NRIVRKTGLK RCGKSCRLRW INYLSPNVNK GNFTEQEEDL IIRLHKLLGN RWSLIAKRVP
101: GRTDNQVKNH WSTHLSKKNR RGLSSAVKTT GEENYPPSLL ITAATASGHH QQDKICDKSF EGLVSASNGN KQKADLTHTN DLNESFAMMD FASGDTGYCL
101: GRTDNQVKNH WSTHLSKKNR RGLSSAVKTT GEENYPPSLL ITAATASGHH QQDKICDKSF EGLVSASNGN KQKADLTHTN DLNESFAMMD FASGDTGYCL
001: MRIRRRDEKE NQEYKKGLWT VEEDNILMDY VLNHGTGQWN RIVRKTGLKR CGKSCRLRWM NYLSPNVNKG NFTEQEEDLI IRLHKLLGNR WSLIAKRVPG
101: RTDNQVKNYW NTHLSKKLVG DYSSAVKTTG EDDDSPPSLF ITAATPSSCH HQQENIYENI AKSFNGVVSA SYEDKPKQEL AQKDVLMATT NDPSHYYGNN
201: ALWVHDDDFE LSSLVMMNFA SGDVEYCL
101: RTDNQVKNYW NTHLSKKLVG DYSSAVKTTG EDDDSPPSLF ITAATPSSCH HQQENIYENI AKSFNGVVSA SYEDKPKQEL AQKDVLMATT NDPSHYYGNN
201: ALWVHDDDFE LSSLVMMNFA SGDVEYCL
Arabidopsis Description
GL1Trichome differentiation protein GL1 [Source:UniProtKB/Swiss-Prot;Acc:P27900]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.