Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G38620.1 | CDX86891 | AT4G09820.1 | 15361138 |
| AT4G38620.1 | CDX99505 | AT4G09820.1 | 15361138 |
| AT4G38620.1 | CDY65427 | AT4G25920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010736.1-P | Field mustard | nucleus | 98.94 | 98.94 |
| CDY52797 | Canola | nucleus | 82.69 | 90.7 |
| CDY12092 | Canola | nucleus | 96.47 | 89.8 |
| AT4G38620.1 | Thale cress | nucleus | 85.16 | 85.46 |
| CDX72743 | Canola | nucleus | 85.87 | 82.65 |
| CDY22416 | Canola | nucleus | 85.87 | 82.65 |
| GSMUA_Achr11P... | Banana | nucleus | 44.17 | 74.85 |
| GSMUA_Achr9P24180_001 | Banana | nucleus | 44.88 | 73.41 |
| GSMUA_Achr8P33900_001 | Banana | nucleus | 51.94 | 72.41 |
| Zm00001d022628_P001 | Maize | nucleus | 54.77 | 71.1 |
| KRH60702 | Soybean | nucleus | 52.3 | 70.48 |
| GSMUA_Achr1P02420_001 | Banana | nucleus | 48.41 | 70.26 |
| VIT_04s0023g03710.t01 | Wine grape | nucleus | 55.83 | 65.29 |
| KRH51400 | Soybean | nucleus | 53.71 | 64.68 |
| KRH29280 | Soybean | nucleus | 55.83 | 64.23 |
| Os09t0538400-01 | Rice | extracellular | 56.54 | 63.74 |
| TraesCS7D01G272400.1 | Wheat | nucleus | 52.3 | 63.25 |
| TraesCS7B01G169900.1 | Wheat | nucleus | 52.3 | 62.98 |
| Solyc01g111500.2.1 | Tomato | nucleus | 55.83 | 62.7 |
| GSMUA_Achr1P07550_001 | Banana | nucleus | 52.3 | 62.45 |
| PGSC0003DMT400015803 | Potato | nucleus | 55.83 | 62.2 |
| HORVU7Hr1G057410.1 | Barley | nucleus | 52.3 | 62.18 |
| KRH24301 | Soybean | nucleus | 55.48 | 62.06 |
| TraesCS7A01G272100.1 | Wheat | nucleus | 51.94 | 61.25 |
| EER99264 | Sorghum | nucleus | 56.18 | 60.23 |
| PGSC0003DMT400034372 | Potato | nucleus | 56.54 | 59.7 |
| Solyc10g055410.1.1 | Tomato | nucleus | 57.24 | 59.34 |
| GSMUA_Achr1P26520_001 | Banana | nucleus | 50.53 | 59.34 |
| TraesCS5B01G330100.1 | Wheat | nucleus | 54.42 | 58.56 |
| TraesCS5D01G335700.1 | Wheat | nucleus | 54.77 | 58.27 |
| EES14116 | Sorghum | nucleus | 53.0 | 58.14 |
| CDX72510 | Canola | nucleus | 55.48 | 57.93 |
| Zm00001d006236_P002 | Maize | nucleus | 55.83 | 57.88 |
| TraesCS5A01G329900.1 | Wheat | nucleus | 54.77 | 57.84 |
| CDY40652 | Canola | nucleus | 55.12 | 57.56 |
| Zm00001d032024_P001 | Maize | nucleus | 51.59 | 57.48 |
| HORVU5Hr1G083910.2 | Barley | nucleus | 54.42 | 57.25 |
| Zm00001d053220_P001 | Maize | nucleus | 51.94 | 56.54 |
| CDX75478 | Canola | nucleus | 56.89 | 56.1 |
| CDX69102 | Canola | nucleus | 56.18 | 55.59 |
| GSMUA_Achr4P25710_001 | Banana | nucleus | 37.46 | 55.21 |
| CDX91687 | Canola | nucleus | 43.82 | 55.11 |
| CDY02243 | Canola | nucleus | 55.12 | 54.36 |
| CDY72116 | Canola | nucleus | 55.12 | 54.36 |
| CDX90721 | Canola | nucleus | 42.4 | 53.57 |
| CDY05057 | Canola | nucleus | 42.05 | 52.42 |
| CDY04798 | Canola | nucleus | 47.7 | 50.19 |
| CDY21378 | Canola | nucleus | 47.35 | 49.81 |
| CDY25747 | Canola | nucleus | 44.88 | 48.11 |
| CDY12520 | Canola | nucleus | 44.88 | 46.69 |
| CDY27055 | Canola | nucleus | 28.27 | 40.4 |
| CDX69561 | Canola | nucleus | 27.56 | 39.59 |
| CDY65324 | Canola | nucleus | 28.27 | 39.41 |
| CDY09882 | Canola | nucleus | 27.21 | 38.89 |
| CDX91023 | Canola | nucleus | 26.86 | 38.38 |
| CDX85583 | Canola | nucleus | 26.86 | 38.38 |
| CDY23616 | Canola | nucleus | 30.74 | 38.16 |
| CDY07085 | Canola | nucleus | 33.57 | 37.85 |
| CDY24177 | Canola | nucleus | 33.22 | 37.45 |
| CDY51833 | Canola | nucleus | 26.15 | 37.19 |
| CDY56151 | Canola | nucleus | 26.15 | 37.19 |
| CDY59254 | Canola | nucleus | 32.51 | 36.08 |
| CDX84119 | Canola | nucleus | 31.1 | 33.72 |
| CDY49363 | Canola | nucleus | 31.1 | 33.72 |
| CDY66972 | Canola | nucleus | 23.32 | 33.0 |
| CDX86461 | Canola | nucleus | 24.73 | 31.11 |
| CDY05636 | Canola | nucleus | 30.39 | 29.66 |
| CDY44571 | Canola | nucleus | 25.8 | 28.63 |
| CDX83327 | Canola | nucleus | 35.34 | 28.41 |
| CDY00035 | Canola | nucleus | 32.51 | 27.88 |
| CDX95725 | Canola | nucleus | 34.63 | 27.76 |
| CDY49609 | Canola | nucleus | 32.51 | 26.36 |
| CDX85403 | Canola | nucleus | 31.8 | 26.32 |
| CDX86237 | Canola | nucleus | 31.8 | 26.24 |
| CDY55384 | Canola | nucleus | 24.38 | 23.39 |
| CDX80105 | Canola | nucleus | 24.73 | 21.41 |
| CDY27486 | Canola | plastid | 5.3 | 6.36 |
Protein Annotations
| EnsemblPlants:CDX90285 | EnsemblPlantsGene:GSBRNA2T00150859001 | Gene3D:1.10.10.60 | GO:A0A078DM72 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF741 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDX90285 | ProteinID:CDX90285.1 |
| SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EE1B7F | MapMan:15.5.2.1 | : |
Description
BnaA08g16990D
Coordinates
chrLK031862:+:1067936..1069543
Molecular Weight (calculated)
31680.9 Da
IEP (calculated)
8.492
GRAVY (calculated)
-0.542
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRSPCCEKA HTNKGAWTKE EDERLTAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY LRPDLKRGNF TEDEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIRRKLINRG IDPTTHRPVQ ESSSASQDSK PTQLIEAITS NNTINISFTS TPKMESTSCF QVKPEKISML TFKEEKDEFL TEEKLPDLNL
201: ELRISLPDVV EGKSTRARCF RCSLGMINGM ECRCGSIRCD VVGVSSGSTG KGGDSSHGFD FLGLATKETT TTSLLGFRSL EMI
101: DNEIKNYWNT HIRRKLINRG IDPTTHRPVQ ESSSASQDSK PTQLIEAITS NNTINISFTS TPKMESTSCF QVKPEKISML TFKEEKDEFL TEEKLPDLNL
201: ELRISLPDVV EGKSTRARCF RCSLGMINGM ECRCGSIRCD VVGVSSGSTG KGGDSSHGFD FLGLATKETT TTSLLGFRSL EMI
001: MGRSPCCEKA HTNKGAWTKE EDERLVAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIRRKLINRG IDPTSHRPIQ ESSASQDSKP TQLEPVTSNT INISFTSAPK VETFHESISF PGKSEKISML TFKEEKDECP VQEKFPDLNL
201: ELRISLPDDV DRLQGHGKST TPRCFKCSLG MINGMECRCG RMRCDVVGGS SKGSDMSNGF DFLGLAKKET TSLLGFRSLE MK
101: DNEIKNYWNT HIRRKLINRG IDPTSHRPIQ ESSASQDSKP TQLEPVTSNT INISFTSAPK VETFHESISF PGKSEKISML TFKEEKDECP VQEKFPDLNL
201: ELRISLPDDV DRLQGHGKST TPRCFKCSLG MINGMECRCG RMRCDVVGGS SKGSDMSNGF DFLGLAKKET TSLLGFRSLE MK
Arabidopsis Description
MYB4Transcription repressor MYB4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZP1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.