Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G020370.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G38620.1 | HORVU1Hr1G020370.2 | AT4G09820.1 | 15361138 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G169900.1 | Wheat | nucleus | 92.86 | 94.04 |
| TraesCS7D01G272400.1 | Wheat | nucleus | 91.18 | 92.73 |
| TraesCS7A01G272100.1 | Wheat | nucleus | 92.44 | 91.67 |
| Zm00001d032024_P001 | Maize | nucleus | 73.95 | 69.29 |
| GSMUA_Achr1P02420_001 | Banana | nucleus | 56.72 | 69.23 |
| KRH60702 | Soybean | nucleus | 60.08 | 68.1 |
| EES14116 | Sorghum | nucleus | 73.53 | 67.83 |
| Zm00001d053220_P001 | Maize | nucleus | 72.27 | 66.15 |
| KRH51400 | Soybean | nucleus | 63.03 | 63.83 |
| VIT_03s0038g02310.t01 | Wine grape | nucleus | 66.39 | 62.95 |
| PGSC0003DMT400015803 | Potato | nucleus | 63.45 | 59.45 |
| KRH29280 | Soybean | nucleus | 61.34 | 59.35 |
| Solyc01g111500.2.1 | Tomato | nucleus | 62.6 | 59.13 |
| HORVU5Hr1G083910.2 | Barley | nucleus | 65.55 | 57.99 |
| KRH24301 | Soybean | nucleus | 61.34 | 57.71 |
| PGSC0003DMT400034372 | Potato | nucleus | 62.6 | 55.6 |
| GSMUA_Achr4P25710_001 | Banana | nucleus | 44.54 | 55.21 |
| HORVU1Hr1G074260.1 | Barley | nucleus | 57.56 | 54.58 |
| Solyc10g055410.1.1 | Tomato | nucleus | 62.6 | 54.58 |
| Bra010736.1-P | Field mustard | nucleus | 62.18 | 52.3 |
| CDX90285 | Canola | nucleus | 62.18 | 52.3 |
| AT4G38620.1 | Thale cress | nucleus | 61.34 | 51.77 |
| HORVU3Hr1G082210.1 | Barley | nucleus | 58.4 | 51.48 |
| HORVU5Hr1G036900.1 | Barley | nucleus | 55.04 | 49.62 |
| CDY22416 | Canola | nucleus | 60.92 | 49.32 |
| CDX72743 | Canola | nucleus | 60.92 | 49.32 |
| Bra033572.1-P | Field mustard | nucleus | 60.92 | 49.32 |
| CDY52797 | Canola | nucleus | 52.1 | 48.06 |
| CDY12092 | Canola | nucleus | 61.34 | 48.03 |
| HORVU4Hr1G063760.1 | Barley | nucleus | 34.45 | 35.5 |
| HORVU7Hr1G034630.1 | Barley | nucleus | 39.92 | 35.45 |
| HORVU4Hr1G018360.2 | Barley | nucleus | 53.36 | 34.79 |
| HORVU3Hr1G100500.1 | Barley | nucleus | 36.97 | 34.51 |
| HORVU4Hr1G082610.1 | Barley | nucleus | 36.97 | 33.59 |
| HORVU0Hr1G006810.2 | Barley | nucleus | 35.71 | 31.72 |
| HORVU4Hr1G054420.3 | Barley | nucleus | 37.4 | 26.18 |
Protein Annotations
| EMBL:AK358405 | EnsemblPlants:HORVU7Hr1G057410.1 | EnsemblPlantsGene:HORVU7Hr1G057410 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF741 | PFAM:PF00249 | PFscan:PS51294 | SMART:SM00717 | SUPFAM:SSF46689 |
| UniParc:UPI0002005143 | UniProt:F2D3E7 | MapMan:15.5.2.1 | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D3E7]
Coordinates
chrchr7H:+:250171116..250172517
Molecular Weight (calculated)
26595.1 Da
IEP (calculated)
8.974
GRAVY (calculated)
-0.508
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRSPCCEKA HTNKGAWTRE EDERLVAHVR AHGEGCWRSL PSAAGLLRCG KSCRLRWINY LRPDLKRGNF SRDEDELIVK LHSLLGNKWS LIAARLPGRT
101: DNEIKNYWNT HIRRKLLGRG IDPVTHRPVT DAAGTTVSFV HPEPPKAEPV TEESKPPRCP DLNLDLCISL PFQEVEERPP ARACAKPVKM EQLQGGGGGL
201: CFRCSILRVR GAATECSCSS NFLGLRAGML DFRSLEMK
101: DNEIKNYWNT HIRRKLLGRG IDPVTHRPVT DAAGTTVSFV HPEPPKAEPV TEESKPPRCP DLNLDLCISL PFQEVEERPP ARACAKPVKM EQLQGGGGGL
201: CFRCSILRVR GAATECSCSS NFLGLRAGML DFRSLEMK
001: MGRSPCCEKE HMNKGAWTKE EDERLVSYIK SHGEGCWRSL PRAAGLLRCG KSCRLRWINY LRPDLKRGNF THDEDELIIK LHSLLGNKWS LIAARLPGRT
101: DNEIKNYWNT HIKRKLLSKG IDPATHRGIN EAKISDLKKT KDQIVKDVSF VTKFEETDKS GDQKQNKYIR NGLVCKEERV VVEEKIGPDL NLELRISPPW
201: QNQREISTCT ASRFYMENDM ECSSETVKCQ TENSSSISYS SIDISSSNVG YDFLGLKTRI LDFRSLEMK
101: DNEIKNYWNT HIKRKLLSKG IDPATHRGIN EAKISDLKKT KDQIVKDVSF VTKFEETDKS GDQKQNKYIR NGLVCKEERV VVEEKIGPDL NLELRISPPW
201: QNQREISTCT ASRFYMENDM ECSSETVKCQ TENSSSISYS SIDISSSNVG YDFLGLKTRI LDFRSLEMK
Arabidopsis Description
MYB7Transcription factor MYB7 [Source:UniProtKB/Swiss-Prot;Acc:Q42379]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.