Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G319800.1 | Wheat | nucleus | 77.86 | 91.07 |
| TraesCS5A01G495500.1 | Wheat | nucleus | 77.86 | 84.3 |
| TraesCS4D01G319700.1 | Wheat | nucleus | 77.86 | 83.95 |
| TraesCS4B01G323300.1 | Wheat | nucleus | 75.95 | 81.22 |
| HORVU4Hr1G063760.1 | Barley | nucleus | 60.69 | 68.83 |
| HORVU7Hr1G034630.1 | Barley | nucleus | 67.56 | 66.04 |
| Zm00001d044975_P001 | Maize | nucleus | 58.4 | 56.25 |
| Zm00001d037118_P001 | Maize | nucleus | 58.4 | 56.04 |
| VIT_11s0016g01310.t01 | Wine grape | nucleus | 35.5 | 42.27 |
| GSMUA_Achr9P27380_001 | Banana | nucleus | 41.6 | 41.92 |
| GSMUA_Achr6P04400_001 | Banana | nucleus | 43.89 | 41.82 |
| HORVU3Hr1G100500.1 | Barley | nucleus | 37.4 | 38.43 |
| HORVU7Hr1G057410.1 | Barley | nucleus | 33.59 | 36.97 |
| VIT_11s0016g01320.t01 | Wine grape | nucleus | 37.79 | 34.86 |
| KRH19274 | Soybean | nucleus | 39.69 | 34.21 |
| KRH02634 | Soybean | nucleus | 40.08 | 34.2 |
| KRH06177 | Soybean | nucleus | 36.64 | 33.68 |
| HORVU1Hr1G074260.1 | Barley | nucleus | 32.06 | 33.47 |
| CDX84119 | Canola | nucleus | 33.21 | 33.33 |
| Bra035532.1-P | Field mustard | nucleus | 32.44 | 32.69 |
| CDY49363 | Canola | nucleus | 32.44 | 32.57 |
| KRH47594 | Soybean | nucleus | 33.59 | 32.12 |
| HORVU5Hr1G083910.2 | Barley | nucleus | 31.3 | 30.48 |
| HORVU5Hr1G036900.1 | Barley | nucleus | 30.53 | 30.3 |
| HORVU3Hr1G082210.1 | Barley | nucleus | 30.15 | 29.26 |
| AT5G35550.2 | Thale cress | nucleus | 29.01 | 29.12 |
| HORVU0Hr1G006810.2 | Barley | nucleus | 29.77 | 29.1 |
| Solyc12g049300.1.1 | Tomato | nucleus | 36.26 | 26.99 |
| HORVU4Hr1G054420.3 | Barley | nucleus | 30.92 | 23.82 |
| HORVU4Hr1G018360.2 | Barley | nucleus | 30.92 | 22.19 |
| PGSC0003DMT400030322 | Potato | nucleus | 2.29 | 3.66 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G082610.1 | EnsemblPlantsGene:HORVU4Hr1G082610 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF459 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| UniParc:UPI000B488B41 | UniProt:A0A287PVM1 | MapMan:15.5.2.1 | : | : | : |
Description
No Description!
Coordinates
chrchr4H:+:622707557..622708707
Molecular Weight (calculated)
28955.1 Da
IEP (calculated)
10.596
GRAVY (calculated)
-0.745
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: KDDGPSLSRS LTQHNTHRRR DREKERMGRR AWSAREGVKR GAWTSKEDET LASYVKANGE GRWKEVPLKA GLRRCGKSCR LRWLNYLRPS IKRGNISDDE
101: EELIVRLHRL LGNRWSLIAG RLPGRTDNEI KNYWNSTLGR KALPVPERST TRMVATPCTS ASSVSSNPGA ATTRAKAATP KLSAAVWAPK PVRCTGGLFF
201: SRDAAPLQRV TETRAVGGDG DECSGSSLAA SSGGGDWMDD VRALASFLES DEDWIRSLQM AD
101: EELIVRLHRL LGNRWSLIAG RLPGRTDNEI KNYWNSTLGR KALPVPERST TRMVATPCTS ASSVSSNPGA ATTRAKAATP KLSAAVWAPK PVRCTGGLFF
201: SRDAAPLQRV TETRAVGGDG DECSGSSLAA SSGGGDWMDD VRALASFLES DEDWIRSLQM AD
001: MGKRATTSVR REELNRGAWT DHEDKILRDY ITTHGEGKWS TLPNQAGLKR CGKSCRLRWK NYLRPGIKRG NISSDEEELI IRLHNLLGNR WSLIAGRLPG
101: RTDNEIKNHW NSNLRKRLPK TQTKQPKRIK HSTNNENNVC VIRTKAIRCS KTLLFSDLSL QKKSSTSPLP LKEQEMDQGG SSLMGDLEFD FDRIHSEFHF
201: PDLMDFDGLD CGNVTSLVSS NEILGELVPA QGNLDLNRPF TSCHHRGDDE DWLRDFTC
101: RTDNEIKNHW NSNLRKRLPK TQTKQPKRIK HSTNNENNVC VIRTKAIRCS KTLLFSDLSL QKKSSTSPLP LKEQEMDQGG SSLMGDLEFD FDRIHSEFHF
201: PDLMDFDGLD CGNVTSLVSS NEILGELVPA QGNLDLNRPF TSCHHRGDDE DWLRDFTC
Arabidopsis Description
TT2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT5G35550]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.