Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G384400.1 | Wheat | nucleus | 95.93 | 97.0 |
| TraesCS3B01G416400.1 | Wheat | nucleus | 95.56 | 96.63 |
| TraesCS3D01G377300.1 | Wheat | nucleus | 96.3 | 95.94 |
| Zm00001d012255_P001 | Maize | nucleus | 75.19 | 80.88 |
| EES01839 | Sorghum | nucleus | 77.78 | 78.07 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.96 | 77.85 |
| Os01t0874300-01 | Rice | extracellular, nucleus | 81.48 | 76.66 |
| Zm00001d042665_P001 | Maize | nucleus | 73.7 | 75.95 |
| GSMUA_Achr3P22200_001 | Banana | nucleus | 60.0 | 74.65 |
| GSMUA_Achr2P20600_001 | Banana | nucleus | 47.04 | 72.57 |
| HORVU1Hr1G074260.1 | Barley | nucleus | 64.44 | 69.32 |
| GSMUA_Achr5P26000_001 | Banana | nucleus | 50.0 | 64.29 |
| GSMUA_Achr6P25420_001 | Banana | nucleus | 56.3 | 64.14 |
| GSMUA_Achr6P07260_001 | Banana | mitochondrion | 46.3 | 62.81 |
| GSMUA_Achr10P... | Banana | nucleus | 50.0 | 62.21 |
| GSMUA_Achr8P32480_001 | Banana | nucleus | 43.7 | 59.0 |
| GSMUA_Achr5P17010_001 | Banana | nucleus | 52.22 | 58.51 |
| HORVU7Hr1G057410.1 | Barley | nucleus | 51.48 | 58.4 |
| AT1G35515.1 | Thale cress | nucleus | 44.44 | 56.6 |
| GSMUA_Achr9P08600_001 | Banana | nucleus | 54.81 | 54.41 |
| CDX90721 | Canola | nucleus | 44.07 | 53.12 |
| Bra000680.1-P | Field mustard | nucleus | 44.07 | 53.12 |
| CDY05057 | Canola | nucleus | 43.7 | 51.98 |
| HORVU5Hr1G036900.1 | Barley | nucleus | 50.74 | 51.89 |
| AT4G09460.1 | Thale cress | nucleus | 45.19 | 51.69 |
| HORVU5Hr1G083910.2 | Barley | nucleus | 50.37 | 50.56 |
| Solyc06g065100.2.1 | Tomato | nucleus | 50.0 | 48.39 |
| GSMUA_Achr6P12930_001 | Banana | nucleus | 51.11 | 48.25 |
| KRH54016 | Soybean | nucleus | 53.7 | 48.17 |
| PGSC0003DMT400080427 | Potato | nucleus | 50.0 | 47.37 |
| KRH63931 | Soybean | nucleus | 52.59 | 47.02 |
| VIT_07s0130g00040.t01 | Wine grape | nucleus | 50.37 | 46.9 |
| HORVU4Hr1G018360.2 | Barley | nucleus | 53.33 | 39.45 |
| HORVU3Hr1G100500.1 | Barley | nucleus | 32.59 | 34.51 |
| HORVU7Hr1G034630.1 | Barley | nucleus | 31.48 | 31.72 |
| HORVU0Hr1G006810.2 | Barley | nucleus | 31.48 | 31.72 |
| HORVU4Hr1G063760.1 | Barley | nucleus | 27.04 | 31.6 |
| HORVU4Hr1G082610.1 | Barley | nucleus | 29.26 | 30.15 |
| HORVU4Hr1G054420.3 | Barley | nucleus | 32.96 | 26.18 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EMBL:AK361531 | EMBL:AK361613 | EMBL:AK362279 | UniProt:F2DCB4 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:HORVU3Hr1G082210 | EnsemblPlants:HORVU3Hr1G082210.1 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF617 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0002005D6D | SEG:seg |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DCB4]
Coordinates
chrchr3H:+:598260583..598261997
Molecular Weight (calculated)
29319.8 Da
IEP (calculated)
9.044
GRAVY (calculated)
-0.509
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRSPCCEKA HTNKGAWTKE EDQRLIGYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWMNY LRPDLKRGNF TDDDDELIIK LHALLGNKWS LIAGQLPGRT
101: DNEIKNYWNT HIKRKLLNRG MDPHTHRPIS AAAASGLTAS TTAPVFPSSP APASRLASAP FASYPGSTVS FARPSPSDDG HSSSGGSSDA PRCPDLNLDL
201: DLDLSMSLPC SPPKAAPPAR STLTSHQQQG ICLCYHLGVR NGEACTCKTA SPAGPRVFRF LRPLEEGQYI
101: DNEIKNYWNT HIKRKLLNRG MDPHTHRPIS AAAASGLTAS TTAPVFPSSP APASRLASAP FASYPGSTVS FARPSPSDDG HSSSGGSSDA PRCPDLNLDL
201: DLDLSMSLPC SPPKAAPPAR STLTSHQQQG ICLCYHLGVR NGEACTCKTA SPAGPRVFRF LRPLEEGQYI
001: MGRSPCCEKA HMNKGAWTKE EDQLLVDYIR KHGEGCWRSL PRAAGLQRCG KSCRLRWMNY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLSRG IDPNSHRLIN ESVVSPSSLQ NDVVETIHLD FSGPVKPEPV REEIGMVNNC ESSGTTSEKD YGNEEDWVLN LELSVGPSYR
201: YESTRKVSVV DSAESTRRWG SELFGAHESD AVCLCCRIGL FRNESCRNCR VSDVRTH
101: DNEIKNYWNT HIKRKLLSRG IDPNSHRLIN ESVVSPSSLQ NDVVETIHLD FSGPVKPEPV REEIGMVNNC ESSGTTSEKD YGNEEDWVLN LELSVGPSYR
201: YESTRKVSVV DSAESTRRWG SELFGAHESD AVCLCCRIGL FRNESCRNCR VSDVRTH
Arabidopsis Description
MYB3MYB3 [Source:UniProtKB/TrEMBL;Acc:A0A178WFN1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.