Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G416400.1 | Wheat | nucleus | 98.13 | 98.13 |
| TraesCS3D01G377300.1 | Wheat | nucleus | 97.75 | 96.31 |
| HORVU3Hr1G082210.1 | Barley | nucleus | 97.0 | 95.93 |
| Zm00001d012255_P001 | Maize | nucleus | 75.66 | 80.48 |
| GSMUA_AchrUn_... | Banana | nucleus | 43.82 | 78.52 |
| EES01839 | Sorghum | nucleus | 78.65 | 78.07 |
| Os01t0874300-01 | Rice | extracellular, nucleus | 82.77 | 77.0 |
| Zm00001d042665_P001 | Maize | nucleus | 74.91 | 76.34 |
| GSMUA_Achr3P22200_001 | Banana | nucleus | 61.05 | 75.12 |
| GSMUA_Achr2P20600_001 | Banana | nucleus | 47.57 | 72.57 |
| TraesCS1A01G268800.1 | Wheat | nucleus | 62.92 | 68.02 |
| GSMUA_Achr5P26000_001 | Banana | nucleus | 50.19 | 63.81 |
| GSMUA_Achr6P25420_001 | Banana | nucleus | 56.55 | 63.71 |
| GSMUA_Achr6P07260_001 | Banana | mitochondrion | 46.82 | 62.81 |
| GSMUA_Achr10P... | Banana | nucleus | 50.94 | 62.67 |
| GSMUA_Achr8P32480_001 | Banana | nucleus | 44.19 | 59.0 |
| GSMUA_Achr5P17010_001 | Banana | nucleus | 53.18 | 58.92 |
| TraesCS7A01G272100.1 | Wheat | nucleus | 51.31 | 57.08 |
| AT1G35515.1 | Thale cress | nucleus | 44.94 | 56.6 |
| TraesCS5A01G111300.1 | Wheat | nucleus | 50.56 | 55.33 |
| GSMUA_Achr9P08600_001 | Banana | nucleus | 55.43 | 54.41 |
| CDX90721 | Canola | nucleus | 44.94 | 53.57 |
| Bra000680.1-P | Field mustard | nucleus | 44.94 | 53.57 |
| CDY05057 | Canola | nucleus | 44.57 | 52.42 |
| AT4G09460.1 | Thale cress | nucleus | 46.07 | 52.12 |
| TraesCS5A01G329900.1 | Wheat | nucleus | 51.69 | 51.49 |
| TraesCS4A01G217800.1 | Wheat | nucleus | 53.93 | 50.0 |
| Solyc06g065100.2.1 | Tomato | nucleus | 50.94 | 48.75 |
| GSMUA_Achr6P12930_001 | Banana | nucleus | 52.06 | 48.6 |
| KRH54016 | Soybean | nucleus | 53.93 | 47.84 |
| PGSC0003DMT400080427 | Potato | nucleus | 50.94 | 47.72 |
| KRH63931 | Soybean | nucleus | 52.81 | 46.69 |
| VIT_07s0130g00040.t01 | Wine grape | nucleus | 50.56 | 46.55 |
| TraesCS3A01G257800.1 | Wheat | nucleus | 34.08 | 34.34 |
| TraesCS7A01G165700.1 | Wheat | nucleus | 32.96 | 33.59 |
| TraesCS5A01G495500.1 | Wheat | nucleus | 30.34 | 33.47 |
| TraesCS4A01G118400.1 | Wheat | nucleus | 34.83 | 26.88 |
| TraesCS1A01G021500.1 | Wheat | nucleus | 33.33 | 26.41 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G384400.1 | EnsemblPlantsGene:TraesCS3A01G384400 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF617 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr3A:+:633921970..633923094
Molecular Weight (calculated)
29106.5 Da
IEP (calculated)
9.018
GRAVY (calculated)
-0.558
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRSPCCEKA HTNKGAWTKE EDQRLIGYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWMNY LRPDLKRGNF TDDDDELIIK LHALLGNKWS LIAGQLPGRT
101: DNEIKNYWNT HIKRKLLNRG MDPHTHRPIS AASGLTASTT APVFPSSPAP ASRLASAPFA FQSSTVSFAR PSPSDDGHSS SGGSSDAPRC PDLNLDLDLD
201: LSMSLPSSPP KTAPPAKSTP TSHQQQGICL CYHLGVRDGE ACTCKTASPA GPRVFRFLRP LEEGQYI
101: DNEIKNYWNT HIKRKLLNRG MDPHTHRPIS AASGLTASTT APVFPSSPAP ASRLASAPFA FQSSTVSFAR PSPSDDGHSS SGGSSDAPRC PDLNLDLDLD
201: LSMSLPSSPP KTAPPAKSTP TSHQQQGICL CYHLGVRDGE ACTCKTASPA GPRVFRFLRP LEEGQYI
001: MGRSPCCEKA HTNKGAWTKE EDQRLVDYIR NHGEGCWRSL PKSAGLLRCG KSCRLRWINY LRPDLKRGNF TDDEDQIIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLSHG IDPQTHRQIN ESKTVSSQVV VPIQNDAVEY SFSNLAVKPK TENSSDNGAS TSGTTTDEDL RQNGECYYSD NSGHIKLNLD
201: LTLGFGSWSG RIVGVGSSAD SKPWCDPVME ARLSLL
101: DNEIKNYWNT HIKRKLLSHG IDPQTHRQIN ESKTVSSQVV VPIQNDAVEY SFSNLAVKPK TENSSDNGAS TSGTTTDEDL RQNGECYYSD NSGHIKLNLD
201: LTLGFGSWSG RIVGVGSSAD SKPWCDPVME ARLSLL
Arabidopsis Description
MYB6Transcription repressor MYB6 [Source:UniProtKB/Swiss-Prot;Acc:Q38851]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.