Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G092900.1 | Wheat | nucleus | 99.31 | 98.96 |
| GSMUA_AchrUn_... | Banana | nucleus | 41.67 | 80.54 |
| GSMUA_Achr2P20600_001 | Banana | nucleus | 44.79 | 73.71 |
| TraesCS4B01G096500.1 | Wheat | nucleus, plastid | 95.83 | 72.44 |
| HORVU4Hr1G018360.2 | Barley | nucleus | 90.97 | 71.78 |
| Os11t0180900-00 | Rice | nucleus | 72.57 | 70.85 |
| GSMUA_Achr6P07260_001 | Banana | mitochondrion | 44.79 | 64.82 |
| GSMUA_Achr3P22200_001 | Banana | nucleus | 48.26 | 64.06 |
| GSMUA_Achr10P... | Banana | nucleus | 47.57 | 63.13 |
| GSMUA_Achr5P26000_001 | Banana | nucleus | 45.49 | 62.38 |
| GSMUA_Achr6P25420_001 | Banana | nucleus | 50.69 | 61.6 |
| GSMUA_Achr8P32480_001 | Banana | nucleus | 42.71 | 61.5 |
| Zm00001d004744_P001 | Maize | nucleus | 56.94 | 59.64 |
| Zm00001d053060_P001 | Maize | nucleus | 58.33 | 58.33 |
| TraesCS5A01G111300.1 | Wheat | nucleus | 48.61 | 57.38 |
| TraesCS1A01G268800.1 | Wheat | nucleus | 48.61 | 56.68 |
| GSMUA_Achr5P17010_001 | Banana | nucleus | 47.22 | 56.43 |
| AT1G35515.1 | Thale cress | nucleus | 41.32 | 56.13 |
| GSMUA_Achr9P08600_001 | Banana | nucleus | 52.08 | 55.15 |
| OQU83016 | Sorghum | nucleus | 59.03 | 53.97 |
| TraesCS3A01G384400.1 | Wheat | nucleus | 50.0 | 53.93 |
| Bra000680.1-P | Field mustard | nucleus | 41.67 | 53.57 |
| CDX90721 | Canola | nucleus | 41.67 | 53.57 |
| TraesCS7A01G272100.1 | Wheat | nucleus | 44.44 | 53.33 |
| TraesCS5A01G329900.1 | Wheat | nucleus | 48.96 | 52.61 |
| AT4G09460.1 | Thale cress | nucleus | 43.06 | 52.54 |
| CDY05057 | Canola | nucleus | 41.32 | 52.42 |
| Solyc06g065100.2.1 | Tomato | nucleus | 47.57 | 49.1 |
| PGSC0003DMT400080427 | Potato | nucleus | 48.26 | 48.77 |
| GSMUA_Achr6P12930_001 | Banana | nucleus | 47.92 | 48.25 |
| VIT_07s0130g00040.t01 | Wine grape | nucleus | 47.22 | 46.9 |
| KRH54016 | Soybean | nucleus | 48.26 | 46.18 |
| KRH63931 | Soybean | nucleus | 48.26 | 46.03 |
| TraesCS3A01G257800.1 | Wheat | nucleus | 31.25 | 33.96 |
| TraesCS5A01G495500.1 | Wheat | nucleus | 28.47 | 33.88 |
| TraesCS7A01G165700.1 | Wheat | nucleus | 29.17 | 32.06 |
| TraesCS1A01G021500.1 | Wheat | nucleus | 31.25 | 26.71 |
| TraesCS4A01G118400.1 | Wheat | nucleus | 30.9 | 25.72 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G217800.1 | EnsemblPlantsGene:TraesCS4A01G217800 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF951 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr4A:+:517884383..517885453
Molecular Weight (calculated)
31432.2 Da
IEP (calculated)
8.715
GRAVY (calculated)
-0.622
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRSPCCEKA HTNKGAWTKE EDQRLIAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY LRPDLKRGNF TEEEDELIIK LHELLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLARG MDPHTHRPLN AIAGAAMPAQ QLRVAHQHQY AAATPGGHHL QPQQQDPFAA LSSSAEPACS HSSDDEPAGS ATPPPPSRRH
201: LGIDLNLSIS LAPYQPDDPA VKQEAATTAS HNNATTSTSA ACMCLNRLGF QGAGEGCRCG GASSVPMQQQ ASTQHMFRFI APLEGGRQ
101: DNEIKNYWNT HIKRKLLARG MDPHTHRPLN AIAGAAMPAQ QLRVAHQHQY AAATPGGHHL QPQQQDPFAA LSSSAEPACS HSSDDEPAGS ATPPPPSRRH
201: LGIDLNLSIS LAPYQPDDPA VKQEAATTAS HNNATTSTSA ACMCLNRLGF QGAGEGCRCG GASSVPMQQQ ASTQHMFRFI APLEGGRQ
001: MGRSPCCEKA HTNKGAWTKE EDQRLVDYIR NHGEGCWRSL PKSAGLLRCG KSCRLRWINY LRPDLKRGNF TDDEDQIIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLSHG IDPQTHRQIN ESKTVSSQVV VPIQNDAVEY SFSNLAVKPK TENSSDNGAS TSGTTTDEDL RQNGECYYSD NSGHIKLNLD
201: LTLGFGSWSG RIVGVGSSAD SKPWCDPVME ARLSLL
101: DNEIKNYWNT HIKRKLLSHG IDPQTHRQIN ESKTVSSQVV VPIQNDAVEY SFSNLAVKPK TENSSDNGAS TSGTTTDEDL RQNGECYYSD NSGHIKLNLD
201: LTLGFGSWSG RIVGVGSSAD SKPWCDPVME ARLSLL
Arabidopsis Description
MYB6Transcription repressor MYB6 [Source:UniProtKB/Swiss-Prot;Acc:Q38851]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.