Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d053060_P001 | Maize | nucleus | 78.1 | 85.42 |
| Zm00001d004744_P001 | Maize | nucleus | 69.84 | 80.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 37.78 | 79.87 |
| GSMUA_Achr2P20600_001 | Banana | nucleus | 40.95 | 73.71 |
| EES16743 | Sorghum | nucleus | 43.17 | 63.26 |
| GSMUA_Achr6P07260_001 | Banana | mitochondrion | 39.68 | 62.81 |
| GSMUA_Achr3P22200_001 | Banana | nucleus | 42.54 | 61.75 |
| GSMUA_Achr5P26000_001 | Banana | nucleus | 40.95 | 61.43 |
| GSMUA_Achr8P32480_001 | Banana | nucleus | 38.41 | 60.5 |
| GSMUA_Achr10P... | Banana | nucleus | 41.59 | 60.37 |
| GSMUA_Achr6P25420_001 | Banana | nucleus | 45.08 | 59.92 |
| Os11t0180900-00 | Rice | nucleus | 55.56 | 59.32 |
| TraesCS4A01G217800.1 | Wheat | nucleus | 53.97 | 59.03 |
| TraesCS4D01G092900.1 | Wheat | nucleus | 53.97 | 58.82 |
| AT1G35515.1 | Thale cress | nucleus | 37.14 | 55.19 |
| GSMUA_Achr5P17010_001 | Banana | nucleus | 41.9 | 54.77 |
| EER99264 | Sorghum | nucleus | 44.76 | 53.41 |
| GSMUA_Achr9P08600_001 | Banana | nucleus | 45.4 | 52.57 |
| EES14116 | Sorghum | nucleus | 42.86 | 52.33 |
| Bra000680.1-P | Field mustard | nucleus | 37.14 | 52.23 |
| CDX90721 | Canola | nucleus | 37.14 | 52.23 |
| EES01839 | Sorghum | nucleus | 44.44 | 52.04 |
| KXG22070 | Sorghum | nucleus | 43.17 | 51.91 |
| CDY05057 | Canola | nucleus | 36.83 | 51.1 |
| AT4G09460.1 | Thale cress | nucleus | 37.46 | 50.0 |
| OQU78830 | Sorghum | nucleus | 44.44 | 49.65 |
| Solyc06g065100.2.1 | Tomato | nucleus | 43.81 | 49.46 |
| PGSC0003DMT400080427 | Potato | nucleus | 43.81 | 48.42 |
| HORVU4Hr1G018360.2 | Barley | nucleus | 55.24 | 47.67 |
| VIT_07s0130g00040.t01 | Wine grape | nucleus | 43.81 | 47.59 |
| KRH54016 | Soybean | nucleus | 44.13 | 46.18 |
| KRH63931 | Soybean | nucleus | 44.13 | 46.03 |
| GSMUA_Achr6P12930_001 | Banana | nucleus | 41.59 | 45.8 |
| TraesCS4B01G096500.1 | Wheat | nucleus, plastid | 53.97 | 44.62 |
| KXG33190 | Sorghum | nucleus | 28.89 | 32.5 |
| EER92144 | Sorghum | nucleus | 28.89 | 30.95 |
| OQU86782 | Sorghum | nucleus | 29.84 | 26.04 |
| EER92385 | Sorghum | nucleus | 27.3 | 24.16 |
Protein Annotations
| EnsemblPlants:OQU83016 | EnsemblPlantsGene:SORBI_3005G062000 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF951 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:OQU83016 | ProteinID:OQU83016.1 | SEG:seg |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI000B42647C | UniProt:A0A1Z5RI36 | MapMan:15.5.2.1 | : |
Description
hypothetical protein
Coordinates
chr5:+:6759654..6761896
Molecular Weight (calculated)
34404.5 Da
IEP (calculated)
8.228
GRAVY (calculated)
-0.695
Length
315 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRSPCCEQA HTNKGAWTKE EDQRLIAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY LRPDLKRGNF TEEEDELIIK FHELFGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLARG TDPQTHRPLA AASGAPAGQQ HYQLEQQMQA AAAGVGTVGH PHHHRHHQQQ HQAPQQQDVI SNSPEAACTS RSSDDEPRSS
201: TPTPPPPPRR HLDIDLNLSI SLSAYQPPEE ESGSIKSPLM MMMMKQEEET AAASAAGGTN AAAAVCLCLN SLGYRPGVEC ACGGNGGVGS SSQSQQWARS
301: FLQAAAAATP CYRGQ
101: DNEIKNYWNT HIKRKLLARG TDPQTHRPLA AASGAPAGQQ HYQLEQQMQA AAAGVGTVGH PHHHRHHQQQ HQAPQQQDVI SNSPEAACTS RSSDDEPRSS
201: TPTPPPPPRR HLDIDLNLSI SLSAYQPPEE ESGSIKSPLM MMMMKQEEET AAASAAGGTN AAAAVCLCLN SLGYRPGVEC ACGGNGGVGS SSQSQQWARS
301: FLQAAAAATP CYRGQ
001: MGRSPCCEKA HTNKGAWTKE EDERLVAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIRRKLINRG IDPTSHRPIQ ESSASQDSKP TQLEPVTSNT INISFTSAPK VETFHESISF PGKSEKISML TFKEEKDECP VQEKFPDLNL
201: ELRISLPDDV DRLQGHGKST TPRCFKCSLG MINGMECRCG RMRCDVVGGS SKGSDMSNGF DFLGLAKKET TSLLGFRSLE MK
101: DNEIKNYWNT HIRRKLINRG IDPTSHRPIQ ESSASQDSKP TQLEPVTSNT INISFTSAPK VETFHESISF PGKSEKISML TFKEEKDECP VQEKFPDLNL
201: ELRISLPDDV DRLQGHGKST TPRCFKCSLG MINGMECRCG RMRCDVVGGS SKGSDMSNGF DFLGLAKKET TSLLGFRSLE MK
Arabidopsis Description
MYB4Transcription repressor MYB4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZP1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.