CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G515900.1	Wheat	nucleus	41.16	59.31
HORVU3Hr1G100500.1	Barley	nucleus	50.0	57.65
TraesCS3D01G468400.1	Wheat	nucleus	50.0	55.47
VIT_11s0016g01310.t01	Wine grape	nucleus	36.73	49.09
GSMUA_Achr10P...	Banana	nucleus	44.22	46.76
EES16743	Sorghum	nucleus	30.61	41.86
KRH47594	Soybean	nucleus	36.39	39.05
CDX84119	Canola	nucleus	34.35	38.7
KRH06177	Soybean	nucleus	37.41	38.6
Bra035532.1-P	Field mustard	nucleus	34.01	38.46
CDY49363	Canola	nucleus	34.01	38.31
KRH19274	Soybean	nucleus	39.46	38.16
KRH02634	Soybean	nucleus	39.46	37.78
VIT_11s0016g01320.t01	Wine grape	nucleus	36.39	37.68
KXG22070	Sorghum	nucleus	31.97	35.88
EES14116	Sorghum	nucleus	31.29	35.66
EER99264	Sorghum	nucleus	31.29	34.85
EES01839	Sorghum	nucleus	30.61	33.46
OQU78830	Sorghum	nucleus	31.63	32.98
AT5G35550.2	Thale cress	nucleus	29.25	32.95
Solyc12g049300.1.1	Tomato	nucleus	39.12	32.67
KXG33190	Sorghum	nucleus	30.61	32.14
OQU83016	Sorghum	nucleus	30.95	28.89
EER92385	Sorghum	nucleus	29.59	24.44
OQU86782	Sorghum	nucleus	29.25	23.82
PGSC0003DMT400030322	Potato	nucleus	4.08	7.32

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:8080419	UniProt:C5WWN5	EnsemblPlants:EER92144	ProteinID:EER92144
ProteinID:EER92144.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF459	InterPro:SANT/Myb	SMART:SM00717
EnsemblPlantsGene:SORBI_3001G340900	SUPFAM:SSF46689	UniParc:UPI0001A82164	RefSeq:XP_002465146.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:62819065..62821694

Molecular Weight (calculated)

32401.5 Da

IEP (calculated)

6.720

GRAVY (calculated)

-0.612

Length

294 amino acids

Sequence
(BLAST)

001: MGRKPCCPKE GLNRGAWTSM EDDILVSYIQ KHGEGKWGSL PRRAGLKRCG KSCRLRWLNY LRPGIKRGNI SDDEEELIIR LHRLLGNRWS LIAGRLPGRT
101: DNEIKNYWNT TLGKKVLKNS GGLKEDSEAA GASSKRRPFS EPTRTVSDTA AQAHARGRPP EPPEASLVRS KALRCTRTAM MLPVAQPTAH ARHGRALETA
201: AGDDHVKAEQ TVVVVKAPTV EVRQDHLPED DLPIDIDLDL DFDMGEMGFL SPWRGEVADG IEPGGQFGGG ELDDLEALLL GPGGDDDVHE FAWF

Best Arabidopsis Sequence Match ( AT5G35550.1 )
(BLAST)

001: MGKRATTSVR REELNRGAWT DHEDKILRDY ITTHGEGKWS TLPNQAGLKR CGKSCRLRWK NYLRPGIKRG NISSDEEELI IRLHNLLGNR WSLIAGRLPG
101: RTDNEIKNHW NSNLRKRLPK TQTKQPKRIK HSTNNENNVC VIRTKAIRCS KTLLFSDLSL QKKSSTSPLP LKEQEMDQGG SSLMGDLEFD FDRIHSEFHF
201: PDLMDFDGLD CGNVTSLVSS NEILGELVPA QGNLDLNRPF TSCHHRGDDE DWLRDFTC

Arabidopsis Description

TT2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT5G35550]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.