Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49363 | Canola | nucleus | 100.0 | 99.62 |
| AT5G35550.2 | Thale cress | nucleus | 64.23 | 63.98 |
| TraesCS3B01G515900.1 | Wheat | nucleus | 35.77 | 45.59 |
| VIT_11s0016g01310.t01 | Wine grape | nucleus | 37.69 | 44.55 |
| Bra022602.1-P | Field mustard | nucleus | 30.38 | 39.9 |
| TraesCS4D01G319800.1 | Wheat | nucleus | 33.85 | 39.29 |
| Bra023486.1-P | Field mustard | nucleus | 28.08 | 38.83 |
| Bra029113.1-P | Field mustard | nucleus | 29.23 | 38.19 |
| HORVU3Hr1G100500.1 | Barley | nucleus | 37.31 | 38.04 |
| Bra000680.1-P | Field mustard | nucleus | 32.69 | 37.95 |
| Bra008740.1-P | Field mustard | nucleus | 28.46 | 37.56 |
| GSMUA_Achr10P... | Banana | nucleus | 40.0 | 37.41 |
| GSMUA_Achr9P27380_001 | Banana | nucleus | 36.92 | 36.92 |
| TraesCS3D01G468400.1 | Wheat | nucleus | 37.31 | 36.6 |
| TraesCS5A01G495500.1 | Wheat | nucleus | 33.85 | 36.36 |
| TraesCS4B01G323300.1 | Wheat | nucleus | 33.85 | 35.92 |
| VIT_11s0016g01320.t01 | Wine grape | nucleus | 39.23 | 35.92 |
| TraesCS4D01G319700.1 | Wheat | nucleus | 33.46 | 35.8 |
| TraesCS7D01G166500.1 | Wheat | nucleus | 34.62 | 35.71 |
| KRH06177 | Soybean | nucleus | 38.85 | 35.44 |
| KRH47594 | Soybean | nucleus | 37.31 | 35.4 |
| TraesCS4D01G224500.1 | Wheat | nucleus | 31.15 | 35.06 |
| TraesCS7B01G070400.1 | Wheat | nucleus | 34.23 | 35.04 |
| GSMUA_Achr6P04400_001 | Banana | nucleus | 36.92 | 34.91 |
| EER92144 | Sorghum | nucleus | 38.46 | 34.01 |
| TraesCS7A01G165700.1 | Wheat | nucleus | 34.23 | 33.97 |
| KRH02634 | Soybean | nucleus | 40.0 | 33.88 |
| Zm00001d044975_P001 | Maize | nucleus | 35.38 | 33.82 |
| KRH19274 | Soybean | nucleus | 39.23 | 33.55 |
| Zm00001d037118_P001 | Maize | nucleus | 35.0 | 33.33 |
| HORVU4Hr1G063760.1 | Barley | nucleus | 29.62 | 33.33 |
| HORVU7Hr1G034630.1 | Barley | nucleus | 33.85 | 32.84 |
| HORVU4Hr1G082610.1 | Barley | nucleus | 32.69 | 32.44 |
| Bra024526.1-P | Field mustard | nucleus | 33.46 | 32.34 |
| Bra017685.1-P | Field mustard | nucleus | 33.46 | 32.1 |
| Bra039395.1-P | Field mustard | nucleus | 30.77 | 31.87 |
| Bra012337.1-P | Field mustard | nucleus | 33.46 | 31.52 |
| Bra027423.1-P | Field mustard | nucleus | 30.77 | 31.37 |
| Bra039065.1-P | Field mustard | nucleus | 23.85 | 31.16 |
| Bra010736.1-P | Field mustard | nucleus | 33.85 | 31.1 |
| Bra025311.1-P | Field mustard | nucleus | 26.54 | 30.67 |
| Bra011576.1-P | Field mustard | nucleus | 33.85 | 30.66 |
| Bra033572.1-P | Field mustard | nucleus | 33.46 | 29.59 |
| Solyc12g049300.1.1 | Tomato | nucleus | 39.62 | 29.26 |
| Bra013055.1-P | Field mustard | nucleus | 31.92 | 28.82 |
| Bra025589.1-P | Field mustard | nucleus | 27.31 | 27.84 |
| Bra000453.1-P | Field mustard | nucleus | 34.62 | 23.94 |
| Bra037419.1-P | Field mustard | nucleus | 30.0 | 22.74 |
| Bra036145.1-P | Field mustard | nucleus | 29.23 | 21.9 |
| Bra004456.1-P | Field mustard | nucleus | 24.23 | 17.26 |
| PGSC0003DMT400030322 | Potato | nucleus | 3.46 | 5.49 |
Protein Annotations
| EnsemblPlants:Bra035532.1 | EnsemblPlants:Bra035532.1-P | EnsemblPlantsGene:Bra035532 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF459 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI0002546385 | UniProt:M4F382 | MapMan:15.5.2.1 | : | : |
Description
AT5G35550 (E=1e-098) TT2, ATMYB123, MYB123, ATTT2 | TT2 (TRANSPARENT TESTA 2); DNA binding / transcription factor
Coordinates
chrA08:-:8260228..8261174
Molecular Weight (calculated)
29697.5 Da
IEP (calculated)
9.307
GRAVY (calculated)
-0.688
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MMRKRESSKV KKEELNRGAW TDQEDKILKD YIMFHGEGKW STLPNQAGLK RCGKSCRLRW KNYLRPGIKR GNISSDEEEL IIRLHNLLGN RWSLIAGRLP
101: GRTDNEIKNH WNSNLRKRLP KSQTNQQKSR KHSNNNNMNK VCVIRPKAIR FPKALTFQNQ SSIGSTSLLT VKENVIDHQA GSPSLLGDLK IDFDKIQSEY
201: LFSDLMDFDG LGCGNVMSLV SSDEVLGDYV SADTSCLGNL DLNRPFTSCL QEDCLWDFNC
101: GRTDNEIKNH WNSNLRKRLP KSQTNQQKSR KHSNNNNMNK VCVIRPKAIR FPKALTFQNQ SSIGSTSLLT VKENVIDHQA GSPSLLGDLK IDFDKIQSEY
201: LFSDLMDFDG LGCGNVMSLV SSDEVLGDYV SADTSCLGNL DLNRPFTSCL QEDCLWDFNC
001: MGKRATTSVR REELNRGAWT DHEDKILRDY ITTHGEGKWS TLPNQAGLKR CGKSCRLRWK NYLRPGIKRG NISSDEEELI IRLHNLLGNR WSLIAGRLPG
101: RTDNEIKNHW NSNLRKRLPK TQTKQPKRIK HSTNNENNVC VIRTKAIRCS KTLLFSDLSL QKKSSTSPLP LKEQEMDQGG SSLMGDLEFD FDRIHSEFHF
201: PDLMDFDGLD CGNVTSLVSS NEILGELVPA QGNLDLNRPF TSCHHRGDDE DWLRDFTC
101: RTDNEIKNHW NSNLRKRLPK TQTKQPKRIK HSTNNENNVC VIRTKAIRCS KTLLFSDLSL QKKSSTSPLP LKEQEMDQGG SSLMGDLEFD FDRIHSEFHF
201: PDLMDFDGLD CGNVTSLVSS NEILGELVPA QGNLDLNRPF TSCHHRGDDE DWLRDFTC
Arabidopsis Description
TT2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT5G35550]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.